Wall clock time and date at job start Mon Mar 30 2020 03:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99381 * 2 1 4 4 H 1.48501 * 109.47189 * 239.99817 * 3 2 1 5 5 H 1.48500 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46623 * 120.00062 * 3 2 1 7 7 C 1.37873 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99875 * 185.12163 * 7 2 1 9 9 C 1.50704 * 119.99675 * 5.12710 * 7 2 1 10 10 H 1.08995 * 109.25129 * 24.33740 * 9 7 2 11 11 C 1.52735 * 109.24937 * 264.87178 * 9 7 2 12 12 C 1.53328 * 108.37543 * 188.61679 * 11 9 7 13 13 C 1.52736 * 108.37213 * 69.84857 * 12 11 9 14 14 C 1.50627 * 110.59421 * 308.95083 * 13 12 11 15 15 C 1.39580 * 117.75442 * 197.45833 * 14 13 12 16 16 N 1.39676 * 119.80329 * 0.27231 * 15 14 13 17 17 C 1.38605 * 120.39024 * 180.25772 * 15 14 13 18 18 C 1.38138 * 119.68580 * 0.10235 * 17 15 14 19 19 C 1.37977 * 119.85087 * 0.16310 * 18 17 15 20 20 C 1.37528 * 122.60788 * 17.67715 * 14 13 12 21 21 H 0.96997 * 120.00538 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.68160 * 68.89147 * 11 9 7 23 23 H 1.09004 * 109.71248 * 308.35286 * 11 9 7 24 24 H 1.09003 * 109.67813 * 310.13158 * 12 11 9 25 25 H 1.08997 * 109.68599 * 189.57214 * 12 11 9 26 26 H 1.09004 * 109.25004 * 188.66379 * 13 12 11 27 27 H 1.08995 * 109.21962 * 69.21665 * 13 12 11 28 28 H 0.97001 * 119.99525 * 179.97438 * 16 15 14 29 29 H 0.97002 * 120.00239 * 359.97438 * 16 15 14 30 30 H 1.07996 * 120.15931 * 180.08588 * 17 15 14 31 31 H 1.07999 * 120.07487 * 179.89153 * 18 17 15 32 32 H 1.08010 * 119.64412 * 179.67210 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0814 -1.1957 0.0830 9 6 1.2557 -2.4965 -0.1178 10 1 0.2996 -2.3182 -0.6097 11 6 1.0057 -3.0610 1.2792 12 6 0.4407 -4.4790 1.1335 13 6 1.5514 -5.3886 0.6125 14 6 2.1959 -4.7907 -0.6106 15 6 2.9549 -5.6341 -1.4235 16 7 3.0886 -6.9839 -1.0902 17 6 3.5765 -5.1401 -2.5596 18 6 3.4442 -3.8044 -2.8859 19 6 2.6980 -2.9708 -2.0783 20 6 2.0655 -3.4625 -0.9427 21 1 -0.4851 0.8400 0.0004 22 1 0.2882 -2.4322 1.8063 23 1 1.9426 -3.0945 1.8353 24 1 -0.3899 -4.4724 0.4277 25 1 0.0963 -4.8384 2.1032 26 1 1.1297 -6.3609 0.3575 27 1 2.3049 -5.5162 1.3896 28 1 3.6151 -7.5726 -1.6534 29 1 2.6549 -7.3326 -0.2957 30 1 4.1618 -5.7963 -3.1867 31 1 3.9273 -3.4124 -3.7687 32 1 2.6011 -1.9258 -2.3337 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293211.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:13 Heat of formation + Delta-G solvation = -15.500939 kcal Electronic energy + Delta-G solvation = -14521.041826 eV Core-core repulsion = 12251.190935 eV Total energy + Delta-G solvation = -2269.850891 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82924 -37.23038 -35.55430 -34.49955 -31.45326 -30.80908 -28.51989 -26.85015 -23.88282 -23.41290 -21.92160 -20.07007 -18.47115 -17.81567 -17.27442 -16.38008 -16.28079 -15.28403 -15.27345 -14.50344 -14.37922 -14.30882 -13.95366 -13.17435 -13.09303 -12.87405 -12.63260 -12.47037 -12.25046 -11.92691 -11.87098 -11.49122 -11.16045 -10.85123 -10.74029 -10.41568 -9.18737 -8.16889 -8.08155 -6.19395 0.77275 0.96930 1.40218 1.41696 1.49598 2.43312 3.15228 3.19036 3.24084 4.03885 4.10494 4.30325 4.41192 4.56924 4.66158 4.79630 4.84988 4.98795 5.00691 5.17048 5.22364 5.23632 5.42771 5.50083 5.62292 5.66726 5.76968 5.84720 5.95639 6.25695 6.26852 6.46625 6.80228 6.94999 7.19302 7.45181 8.96880 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034657 B = 0.010075 C = 0.008269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.717016 B = 2778.424887 C = 3385.279634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.045 0.955 9 C 0.064 3.936 10 H 0.028 0.972 11 C -0.094 4.094 12 C -0.114 4.114 13 C -0.057 4.057 14 C -0.183 4.183 15 C 0.209 3.791 16 N -0.867 5.867 17 C -0.220 4.220 18 C -0.087 4.087 19 C -0.188 4.188 20 C -0.022 4.022 21 H 0.262 0.738 22 H 0.031 0.969 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.406 0.594 29 H 0.402 0.598 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 -12.702 -1.642 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.045 3.955 10 H 0.046 0.954 11 C -0.132 4.132 12 C -0.151 4.151 13 C -0.094 4.094 14 C -0.188 4.188 15 C 0.104 3.896 16 N -0.409 5.409 17 C -0.243 4.243 18 C -0.106 4.106 19 C -0.208 4.208 20 C -0.023 4.023 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.236 0.764 29 H 0.233 0.767 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.961 -12.552 -1.647 13.597 hybrid contribution 0.177 1.203 0.026 1.216 sum 5.138 -11.349 -1.621 12.563 Atomic orbital electron populations 1.70047 1.07253 1.27374 1.51910 1.25715 0.95612 1.02331 0.94909 0.85727 0.78493 0.79294 0.78899 1.19629 1.20840 1.19654 1.21235 0.92767 0.91443 1.49398 0.93659 1.17799 0.94419 0.91422 0.91841 0.95438 1.21441 0.98471 0.94993 0.98278 1.21546 0.97595 0.95227 1.00766 1.20178 0.96982 0.98093 0.94134 1.19366 1.05887 0.93004 1.00511 1.17775 0.93390 0.85507 0.92944 1.42355 1.60342 1.05759 1.32456 1.20598 1.07986 0.96187 0.99546 1.20992 0.97315 0.93557 0.98737 1.21038 1.02803 0.99504 0.97484 1.20142 0.94593 0.93125 0.94406 0.92948 0.95059 0.94095 0.93509 0.90444 0.89765 0.91006 0.76442 0.76735 0.84093 0.84967 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 12.82 21.45 0.28 -55.35 16 2 C 0.01 0.71 5.45 84.65 0.46 1.17 16 3 Si 0.95 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.51 -29.11 6.86 25.60 0.18 -28.93 16 8 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.06 3.35 2.26 -12.39 -0.03 3.32 16 10 H 0.03 1.66 7.35 -2.39 -0.02 1.64 16 11 C -0.09 -4.37 5.24 30.62 0.16 -4.21 16 12 C -0.11 -4.15 5.98 30.62 0.18 -3.97 16 13 C -0.06 -1.81 4.87 29.74 0.14 -1.66 16 14 C -0.18 -6.98 5.75 -19.73 -0.11 -7.10 16 15 C 0.21 6.61 6.72 38.30 0.26 6.87 16 16 N -0.87 -18.64 8.95 -51.14 -0.46 -19.10 16 17 C -0.22 -6.88 9.88 22.33 0.22 -6.66 16 18 C -0.09 -3.15 10.04 22.18 0.22 -2.93 16 19 C -0.19 -8.49 9.04 22.38 0.20 -8.29 16 20 C -0.02 -1.01 5.42 -19.87 -0.11 -1.12 16 21 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 22 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.04 1.89 8.08 -2.39 -0.02 1.87 16 24 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.08 2.12 7.00 -2.39 -0.02 2.11 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.41 6.45 8.83 -92.71 -0.82 5.63 16 29 H 0.40 7.41 6.86 -92.71 -0.64 6.77 16 30 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 31 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 32 H 0.09 4.65 7.25 -2.91 -0.02 4.63 16 Total: -1.00 -65.73 260.30 3.30 -62.44 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.33 Total: 18.47 kcal Atomic # 6 Polarization: -55.28 SS G_CDS: 1.78 Total: -53.50 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -0.18 Total: -74.44 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.73 3.30 -62.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293211.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.938 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds