Wall clock time and date at job start Mon Mar 30 2020 02:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48502 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47509 * 300.00647 * 3 2 1 6 6 H 1.48502 * 109.46892 * 60.00503 * 3 2 1 7 7 C 1.37879 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99870 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47107 * 299.99867 * 9 7 2 11 11 N 1.46895 * 109.47469 * 60.00008 * 9 7 2 12 12 C 1.50701 * 109.46958 * 180.02562 * 9 7 2 13 13 C 1.40465 * 120.15248 * 279.99884 * 12 9 7 14 14 C 1.34954 * 120.29754 * 180.02562 * 13 12 9 15 15 N 1.36488 * 120.61322 * 359.97438 * 14 13 12 16 16 C 1.36833 * 132.56895 * 179.97438 * 15 14 13 17 17 C 1.35105 * 107.17888 * 180.02562 * 16 15 14 18 18 N 1.33519 * 108.62405 * 0.26846 * 17 16 15 19 19 C 1.32553 * 109.15715 * 359.56153 * 18 17 16 20 20 C 1.36030 * 120.15173 * 99.97893 * 12 9 7 21 21 H 0.97004 * 119.99959 * 359.97438 * 1 2 3 22 22 H 1.00898 * 111.00198 * 296.05105 * 11 9 7 23 23 H 1.00901 * 110.99477 * 60.00108 * 11 9 7 24 24 H 1.07999 * 119.85496 * 359.97438 * 13 12 9 25 25 H 1.08005 * 119.69487 * 179.97438 * 14 13 12 26 26 H 1.08004 * 126.41207 * 0.04444 * 16 15 14 27 27 H 1.08002 * 125.68430 * 179.97438 * 17 16 15 28 28 H 1.07995 * 120.33602 * 0.04316 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 0.4060 -2.5767 -1.1996 12 6 2.2303 -3.6446 -0.0005 13 6 2.8491 -4.0438 -1.1967 14 6 3.7261 -5.0695 -1.2001 15 7 4.0249 -5.7324 -0.0451 16 6 4.8576 -6.7826 0.2306 17 6 4.7622 -7.0305 1.5553 18 7 3.8941 -6.1678 2.0890 19 6 3.4374 -5.3656 1.1378 20 6 2.5194 -4.2964 1.1579 21 1 -0.4850 0.8401 0.0004 22 1 -0.3013 -1.8572 -1.1907 23 1 0.9637 -2.5252 -2.0389 24 1 2.6214 -3.5282 -2.1179 25 1 4.1959 -5.3686 -2.1255 26 1 5.4758 -7.3138 -0.4781 27 1 5.2954 -7.8013 2.0920 28 1 2.0494 -3.9983 2.0834 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261293558.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:52 Heat of formation + Delta-G solvation = 65.618590 kcal Electronic energy + Delta-G solvation = -13893.553029 eV Core-core repulsion = 11523.679401 eV Total energy + Delta-G solvation = -2369.873627 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.59338 -38.93185 -36.33764 -34.41056 -32.87433 -30.92080 -29.68713 -27.85246 -24.97303 -24.30779 -22.63929 -21.60151 -18.78706 -18.55667 -17.42412 -17.19881 -16.69893 -16.26254 -15.44621 -15.19851 -14.89075 -14.78318 -14.12078 -13.56869 -13.43473 -12.92938 -12.75475 -12.60364 -12.56993 -12.07013 -11.67773 -11.48154 -11.02797 -10.71860 -9.68038 -9.25223 -8.63590 -8.12714 -6.40720 -0.01918 0.46091 1.36533 1.40950 1.50933 1.81662 2.06105 2.35165 2.70756 3.03414 3.41591 3.66025 3.94073 4.09863 4.32963 4.53018 4.61052 4.69538 4.72618 5.04203 5.18456 5.20782 5.61617 5.63894 5.77848 5.80947 6.02167 6.24529 6.60888 6.87880 7.01394 7.11965 7.36446 8.80254 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.046749 B = 0.007572 C = 0.007339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.793299 B = 3697.080004 C = 3814.479594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.283 1.283 7 C -0.558 4.558 8 H 0.048 0.952 9 C 0.246 3.754 10 H 0.014 0.986 11 N -0.840 5.840 12 C -0.016 4.016 13 C -0.126 4.126 14 C 0.053 3.947 15 N -0.369 5.369 16 C -0.102 4.102 17 C 0.007 3.993 18 N -0.548 5.548 19 C 0.209 3.791 20 C -0.134 4.134 21 H 0.269 0.731 22 H 0.348 0.652 23 H 0.323 0.677 24 H 0.163 0.837 25 H 0.210 0.790 26 H 0.224 0.776 27 H 0.208 0.792 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -9.235 -5.295 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.598 4.598 8 H 0.067 0.933 9 C 0.136 3.864 10 H 0.032 0.968 11 N -0.369 5.369 12 C -0.023 4.023 13 C -0.147 4.147 14 C -0.068 4.068 15 N -0.041 5.041 16 C -0.232 4.232 17 C -0.143 4.143 18 N -0.270 5.270 19 C -0.034 4.034 20 C -0.155 4.155 21 H 0.078 0.922 22 H 0.163 0.837 23 H 0.134 0.866 24 H 0.181 0.819 25 H 0.227 0.773 26 H 0.241 0.759 27 H 0.225 0.775 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.022 -9.877 -4.233 13.410 hybrid contribution 0.627 2.073 -0.512 2.225 sum 8.650 -7.805 -4.745 12.580 Atomic orbital electron populations 1.69838 1.06899 1.28096 1.50409 1.25699 0.95708 1.02243 0.93840 0.85486 0.78749 0.79440 0.77779 1.19779 1.19958 1.20899 1.21962 0.93336 0.91993 1.52521 0.93348 1.17757 0.88860 0.88561 0.91210 0.96841 1.59463 1.18036 1.55563 1.03888 1.20193 0.95354 0.94212 0.92521 1.20895 0.96997 0.97283 0.99494 1.22181 1.00069 0.94758 0.89750 1.43095 1.29239 1.23292 1.08463 1.23309 1.04110 0.95984 0.99807 1.23110 0.98567 1.00183 0.92460 1.70676 1.16713 1.09244 1.30323 1.20894 1.00265 0.99629 0.82596 1.19942 1.00135 0.95587 0.99813 0.92163 0.83672 0.86627 0.81917 0.77303 0.75904 0.77531 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.17 11.54 21.45 0.25 -48.92 15 2 C 0.03 1.35 5.38 84.66 0.46 1.81 15 3 Si 0.96 41.81 29.54 68.60 2.03 43.83 15 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 15 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 7 C -0.56 -29.23 8.71 25.60 0.22 -29.01 15 8 H 0.05 2.57 7.74 -2.91 -0.02 2.55 15 9 C 0.25 12.08 2.95 43.42 0.13 12.21 15 10 H 0.01 0.76 7.99 -2.38 -0.02 0.74 15 11 N -0.84 -38.00 9.02 -174.96 -1.58 -39.58 15 12 C -0.02 -0.69 4.89 -19.83 -0.10 -0.78 15 13 C -0.13 -4.22 9.25 22.06 0.20 -4.02 15 14 C 0.05 1.45 10.95 83.21 0.91 2.36 15 15 N -0.37 -11.65 2.94 -352.15 -1.04 -12.69 15 16 C -0.10 -2.53 11.76 83.19 0.98 -1.55 15 17 C 0.01 0.21 11.83 83.71 0.99 1.20 15 18 N -0.55 -21.23 11.32 -194.35 -2.20 -23.43 15 19 C 0.21 8.32 7.81 134.11 1.05 9.37 15 20 C -0.13 -5.77 9.72 22.42 0.22 -5.55 15 21 H 0.27 13.74 8.31 -92.71 -0.77 12.97 15 22 H 0.35 17.14 7.08 -89.70 -0.63 16.50 15 23 H 0.32 13.11 7.37 -89.69 -0.66 12.45 15 24 H 0.16 4.82 6.71 -2.91 -0.02 4.80 15 25 H 0.21 3.35 8.06 -2.91 -0.02 3.33 15 26 H 0.22 3.10 8.06 -2.91 -0.02 3.08 15 27 H 0.21 4.06 8.06 -2.91 -0.02 4.04 15 28 H 0.13 5.62 8.03 -2.91 -0.02 5.60 15 Total: -1.00 -64.66 246.32 2.42 -62.25 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.10 Total: 32.51 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.06 Total: -13.97 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -4.57 Total: -124.62 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -64.66 2.42 -62.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293558.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.866 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds