Wall clock time and date at job start Mon Mar 30 2020 03:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 11 11 C 1.38263 * 120.06264 * 269.72404 * 10 9 7 12 12 C 1.38035 * 119.82494 * 179.81758 * 11 10 9 13 13 C 1.38667 * 120.34581 * 0.52627 * 12 11 10 14 14 C 1.37830 * 119.85736 * 359.54546 * 13 12 11 15 15 C 1.38012 * 120.06473 * 89.99630 * 10 9 7 16 16 C 1.50622 * 121.84714 * 180.58280 * 14 13 12 17 17 N 1.46627 * 110.50231 * 342.27297 * 16 14 13 18 18 C 1.47153 * 110.27633 * 52.52056 * 17 16 14 19 19 C 1.50725 * 118.48871 * 179.33307 * 13 12 11 20 20 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 22 22 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 23 23 H 1.07996 * 120.08357 * 0.06899 * 11 10 9 24 24 H 1.08007 * 119.82527 * 180.24945 * 12 11 10 25 25 H 1.08004 * 119.81121 * 0.02562 * 15 10 9 26 26 H 1.09004 * 109.26778 * 102.53835 * 16 14 13 27 27 H 1.09000 * 109.27398 * 222.00710 * 16 14 13 28 28 H 1.00895 * 110.99945 * 175.95758 * 17 16 14 29 29 H 1.09002 * 109.63397 * 169.08624 * 18 17 16 30 30 H 1.09006 * 109.79504 * 48.59306 * 18 17 16 31 31 H 1.09004 * 109.38619 * 283.18165 * 19 13 12 32 32 H 1.08994 * 109.38594 * 42.98466 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2305 -3.6445 0.0182 11 6 2.6763 -4.1808 -1.1757 12 6 3.5762 -5.2274 -1.1646 13 6 4.0272 -5.7508 0.0377 14 6 3.5821 -5.2176 1.2282 15 6 2.6799 -4.1638 1.2153 16 6 4.0524 -5.7427 2.5593 17 7 4.6472 -7.0741 2.4051 18 6 5.6827 -7.0520 1.3599 19 6 4.9979 -6.9033 0.0010 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6248 -2.5524 0.9029 22 1 0.6241 -2.5613 -0.8770 23 1 2.3243 -3.7792 -2.1144 24 1 3.9275 -5.6437 -2.0973 25 1 2.3274 -3.7472 2.1474 26 1 4.7968 -5.0617 2.9720 27 1 3.2046 -5.8043 3.2416 28 1 5.0240 -7.4053 3.2805 29 1 6.2483 -7.9835 1.3849 30 1 6.3557 -6.2105 1.5247 31 1 4.4604 -7.8216 -0.2358 32 1 5.7515 -6.7174 -0.7642 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261295917.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:29 Heat of formation + Delta-G solvation = 3.529376 kcal Electronic energy + Delta-G solvation = -13984.326577 eV Core-core repulsion = 11715.300903 eV Total energy + Delta-G solvation = -2269.025674 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58431 -36.53072 -33.65318 -32.29613 -30.87406 -29.35356 -26.57528 -24.19370 -23.33952 -22.01210 -21.32065 -18.82128 -16.82572 -16.51119 -15.33771 -15.09136 -14.25094 -14.15126 -14.00904 -13.70273 -13.12161 -12.76465 -12.42360 -12.28317 -11.85895 -11.67973 -11.22028 -10.91419 -10.78014 -10.63886 -10.24898 -10.13414 -9.75997 -8.88398 -8.66928 -8.37745 -8.07027 -7.63179 -6.38220 -4.09400 1.96060 2.05249 3.43031 3.44704 3.63707 4.18489 4.34490 4.56288 4.88527 5.01722 5.24858 5.36083 5.37993 5.47284 5.53320 5.62367 5.72045 5.82574 5.93531 6.08154 6.18555 6.28082 6.52965 6.70212 6.83943 7.03353 7.06134 7.16743 7.20170 7.34813 7.68164 7.68777 8.13160 8.42920 8.83564 9.61535 11.00488 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.045204 B = 0.006645 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.263926 B = 4212.549621 C = 4340.519230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.592 4.592 8 H 0.050 0.950 9 C 0.036 3.964 10 C -0.030 4.030 11 C -0.122 4.122 12 C -0.123 4.123 13 C -0.101 4.101 14 C -0.084 4.084 15 C -0.121 4.121 16 C 0.100 3.900 17 N -0.685 5.685 18 C 0.055 3.945 19 C -0.069 4.069 20 H 0.269 0.731 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.341 0.659 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.748 -12.449 2.405 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.630 4.630 8 H 0.068 0.932 9 C -0.001 4.001 10 C -0.030 4.030 11 C -0.140 4.140 12 C -0.141 4.141 13 C -0.102 4.102 14 C -0.084 4.084 15 C -0.139 4.139 16 C -0.029 4.029 17 N -0.315 5.315 18 C -0.075 4.075 19 C -0.106 4.106 20 H 0.079 0.921 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.135 0.865 24 H 0.129 0.871 25 H 0.134 0.866 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.158 0.842 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.055 -11.037 1.989 14.414 hybrid contribution 0.919 -1.116 0.408 1.502 sum 9.975 -12.153 2.397 15.904 Atomic orbital electron populations 1.70788 1.06843 1.30606 1.46489 1.25880 0.96517 1.02629 0.93719 0.83528 0.74877 0.75209 0.76599 1.20667 1.21420 1.21387 1.21896 0.94302 0.90885 1.55896 0.93196 1.18462 0.93237 0.91409 0.97009 1.20333 0.96107 0.94547 0.91998 1.21010 0.98234 0.96526 0.98249 1.20944 0.98782 0.97654 0.96701 1.19243 1.00154 0.98212 0.92565 1.19388 0.98497 0.96976 0.93576 1.20893 0.98321 0.96361 0.98361 1.20734 0.98706 0.88421 0.95018 1.60593 1.34393 1.25714 1.10795 1.21963 0.92593 1.00415 0.92479 1.20423 0.96876 0.96941 0.96388 0.92070 0.96323 0.96284 0.86546 0.87064 0.86631 0.94186 0.89775 0.84176 0.90783 0.94738 0.90687 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.92 13.65 55.43 0.76 -27.17 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 3 Si 1.07 25.52 29.90 -169.99 -5.08 20.43 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.59 -17.08 9.09 -34.44 -0.31 -17.40 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.94 4.42 -29.03 -0.13 0.81 16 10 C -0.03 -0.68 5.06 -104.70 -0.53 -1.21 16 11 C -0.12 -2.51 9.71 -39.65 -0.38 -2.89 16 12 C -0.12 -2.17 9.66 -39.50 -0.38 -2.55 16 13 C -0.10 -1.73 5.77 -104.60 -0.60 -2.33 16 14 C -0.08 -1.50 5.79 -104.63 -0.61 -2.11 16 15 C -0.12 -2.49 9.31 -39.48 -0.37 -2.85 16 16 C 0.10 1.43 6.34 -5.16 -0.03 1.40 16 17 N -0.68 -8.44 6.88 -115.17 -0.79 -9.24 16 18 C 0.05 0.64 6.58 -3.74 -0.02 0.61 16 19 C -0.07 -0.90 5.95 -27.92 -0.17 -1.07 16 20 H 0.27 8.19 7.22 -40.82 -0.29 7.90 16 21 H 0.02 0.50 7.96 -51.92 -0.41 0.09 16 22 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16 23 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 24 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 25 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 28 H 0.34 3.25 8.90 -39.29 -0.35 2.90 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -31.51 267.58 -9.19 -40.71 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.47 Total: 0.45 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -3.64 Total: -29.22 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.04 Total: -36.40 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.51 -9.19 -40.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295917.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.236 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds