Wall clock time and date at job start Mon Mar 30 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99858 * 2 1 4 4 H 1.48499 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47227 * 300.00194 * 3 2 1 6 6 H 1.48507 * 109.47255 * 59.99994 * 3 2 1 7 7 C 1.37879 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99526 * 185.09120 * 7 2 1 9 9 C 1.50698 * 120.00215 * 5.10030 * 7 2 1 10 10 H 1.09007 * 109.25337 * 25.40131 * 9 7 2 11 11 C 1.52797 * 109.24736 * 265.99472 * 9 7 2 12 12 C 1.53324 * 108.32708 * 188.61520 * 11 9 7 13 13 C 1.52722 * 108.41935 * 69.90938 * 12 11 9 14 14 C 1.50658 * 110.60431 * 308.92130 * 13 12 11 15 15 C 1.38990 * 117.67004 * 197.51325 * 14 13 12 16 16 C 1.37786 * 120.65221 * 180.24336 * 15 14 13 17 17 C 1.38944 * 119.69735 * 359.97438 * 16 15 14 18 18 N 1.39669 * 120.19548 * 179.91578 * 17 16 15 19 19 C 1.38601 * 119.60569 * 359.89883 * 17 16 15 20 20 C 1.37732 * 122.53960 * 17.55722 * 14 13 12 21 21 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.74182 * 68.88910 * 11 9 7 23 23 H 1.08995 * 109.66603 * 308.29806 * 11 9 7 24 24 H 1.09001 * 109.68282 * 310.17007 * 12 11 9 25 25 H 1.09000 * 109.68397 * 189.65235 * 12 11 9 26 26 H 1.09001 * 109.25314 * 69.21078 * 13 12 11 27 27 H 1.09003 * 109.25283 * 188.62913 * 13 12 11 28 28 H 1.07997 * 119.67584 * 0.21844 * 15 14 13 29 29 H 1.08007 * 120.15245 * 179.97438 * 16 15 14 30 30 H 0.97006 * 120.00117 * 179.97438 * 18 17 16 31 31 H 0.96993 * 120.00441 * 359.97438 * 18 17 16 32 32 H 1.08003 * 119.75254 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1958 0.0835 9 6 1.2555 -2.4966 -0.1149 10 1 0.3074 -2.3222 -0.6237 11 6 0.9815 -3.0458 1.2844 12 6 0.4168 -4.4643 1.1435 13 6 1.5342 -5.3820 0.6520 14 6 2.2014 -4.7991 -0.5666 15 6 2.9678 -5.6515 -1.3527 16 6 3.6092 -5.1822 -2.4782 17 6 3.4887 -3.8439 -2.8316 18 7 4.1358 -3.3568 -3.9694 19 6 2.7221 -2.9953 -2.0485 20 6 2.0770 -3.4727 -0.9162 21 1 -0.4851 0.8400 0.0004 22 1 0.2565 -2.4109 1.7936 23 1 1.9096 -3.0752 1.8552 24 1 -0.4014 -4.4639 0.4233 25 1 0.0542 -4.8128 2.1106 26 1 2.2739 -5.5032 1.4433 27 1 1.1148 -6.3562 0.4007 28 1 3.0618 -6.6918 -1.0783 29 1 4.2031 -5.8517 -3.0830 30 1 4.0494 -2.4220 -4.2137 31 1 4.6717 -3.9531 -4.5153 32 1 2.6270 -1.9545 -2.3208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261301735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:46 Heat of formation + Delta-G solvation = -1.035989 kcal Electronic energy + Delta-G solvation = -14452.081529 eV Core-core repulsion = 12182.857886 eV Total energy + Delta-G solvation = -2269.223643 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.15428 -36.02036 -33.45022 -32.42841 -30.87659 -28.43713 -27.20529 -24.73621 -22.32502 -21.40885 -20.85086 -18.37733 -16.50542 -16.10447 -15.92658 -14.74510 -14.49217 -13.91667 -13.44881 -12.88606 -12.60146 -12.55592 -12.32993 -11.81304 -11.40868 -11.28230 -10.93006 -10.74372 -10.48896 -10.29550 -10.02488 -9.62526 -9.47638 -8.98693 -8.94171 -8.39320 -7.67361 -6.73040 -6.01708 -4.03677 2.31671 2.43568 3.28554 3.37313 3.41988 4.42408 4.42807 4.72847 5.28332 5.51163 5.71748 5.80929 5.90312 5.91268 6.23341 6.26340 6.48830 6.53273 6.66613 6.70062 6.76717 6.91408 7.11895 7.14276 7.22646 7.32083 7.55566 7.71519 7.76839 7.94598 8.02154 8.18625 8.28787 8.46072 9.04735 9.58790 11.07023 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.011845 C = 0.008483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.403992 B = 2363.358654 C = 3299.988972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.501 4.501 8 H 0.056 0.944 9 C 0.063 3.937 10 H 0.070 0.930 11 C -0.099 4.099 12 C -0.123 4.123 13 C -0.063 4.063 14 C -0.151 4.151 15 C -0.086 4.086 16 C -0.219 4.219 17 C 0.194 3.806 18 N -0.888 5.888 19 C -0.176 4.176 20 C 0.012 3.988 21 H 0.260 0.740 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.394 0.606 31 H 0.388 0.612 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -7.837 -3.379 9.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.045 3.955 10 H 0.087 0.913 11 C -0.137 4.137 12 C -0.160 4.160 13 C -0.100 4.100 14 C -0.152 4.152 15 C -0.105 4.105 16 C -0.241 4.241 17 C 0.092 3.908 18 N -0.428 5.428 19 C -0.198 4.198 20 C 0.011 3.989 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.222 0.778 31 H 0.215 0.785 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.168 -7.732 -3.324 9.392 hybrid contribution 0.734 1.062 -0.390 1.349 sum 4.902 -6.669 -3.715 9.072 Atomic orbital electron populations 1.69943 1.05887 1.26495 1.50692 1.24977 0.94814 0.99050 0.95031 0.86601 0.80292 0.83964 0.77577 1.19722 1.21041 1.21077 1.21083 0.93208 0.89847 1.49817 0.92571 1.17974 0.95885 0.90901 0.90767 0.91264 1.21618 0.99264 0.92763 1.00057 1.21645 0.97476 0.97514 0.99403 1.20242 0.97158 0.97535 0.95067 1.19472 1.03119 0.93862 0.98781 1.20703 0.96989 0.98276 0.94543 1.20219 1.08540 0.93972 1.01393 1.17793 0.92790 0.92707 0.87517 1.42350 1.58409 1.12981 1.29041 1.20796 1.02134 0.99612 0.97281 1.20257 0.93067 0.92582 0.93001 0.92989 0.92318 0.93716 0.92520 0.93438 0.92331 0.92803 0.87656 0.87782 0.77849 0.78497 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 12.84 55.43 0.71 -24.73 16 2 C 0.06 1.72 5.45 -17.82 -0.10 1.62 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.50 -13.57 6.88 -34.44 -0.24 -13.80 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.06 1.57 2.24 -93.05 -0.21 1.36 16 10 H 0.07 1.93 7.38 -51.93 -0.38 1.55 16 11 C -0.10 -2.25 5.24 -26.67 -0.14 -2.39 16 12 C -0.12 -2.33 5.97 -26.71 -0.16 -2.49 16 13 C -0.06 -1.12 5.67 -28.05 -0.16 -1.27 16 14 C -0.15 -3.02 5.74 -104.55 -0.60 -3.62 16 15 C -0.09 -1.54 9.60 -39.47 -0.38 -1.92 16 16 C -0.22 -3.79 9.90 -39.49 -0.39 -4.18 16 17 C 0.19 3.57 6.75 -83.89 -0.57 3.00 16 18 N -0.89 -12.76 9.09 32.36 0.29 -12.46 16 19 C -0.18 -3.80 8.89 -39.24 -0.35 -4.15 16 20 C 0.01 0.27 5.42 -104.63 -0.57 -0.30 16 21 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 22 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 23 H 0.04 1.01 8.08 -51.93 -0.42 0.59 16 24 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 28 H 0.11 1.58 8.05 -52.49 -0.42 1.16 16 29 H 0.10 1.52 8.06 -52.48 -0.42 1.09 16 30 H 0.39 5.26 8.85 -40.82 -0.36 4.90 16 31 H 0.39 4.48 8.85 -40.82 -0.36 4.12 16 32 H 0.13 2.85 7.26 -52.48 -0.38 2.47 16 LS Contribution 263.84 15.07 3.98 3.98 Total: -1.00 -28.88 263.84 -8.30 -37.18 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.41 Total: 8.06 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -3.85 Total: -28.13 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 1.01 Total: -37.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.88 -8.30 -37.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.148 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds