Wall clock time and date at job start Mon Mar 30 2020 03:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99858 * 2 1 4 4 H 1.48499 * 109.47286 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47227 * 300.00194 * 3 2 1 6 6 H 1.48507 * 109.47255 * 59.99994 * 3 2 1 7 7 C 1.37879 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99526 * 185.09120 * 7 2 1 9 9 C 1.50698 * 120.00215 * 5.10030 * 7 2 1 10 10 H 1.09007 * 109.25337 * 25.40131 * 9 7 2 11 11 C 1.52797 * 109.24736 * 265.99472 * 9 7 2 12 12 C 1.53324 * 108.32708 * 188.61520 * 11 9 7 13 13 C 1.52722 * 108.41935 * 69.90938 * 12 11 9 14 14 C 1.50658 * 110.60431 * 308.92130 * 13 12 11 15 15 C 1.38990 * 117.67004 * 197.51325 * 14 13 12 16 16 C 1.37786 * 120.65221 * 180.24336 * 15 14 13 17 17 C 1.38944 * 119.69735 * 359.97438 * 16 15 14 18 18 N 1.39669 * 120.19548 * 179.91578 * 17 16 15 19 19 C 1.38601 * 119.60569 * 359.89883 * 17 16 15 20 20 C 1.37732 * 122.53960 * 17.55722 * 14 13 12 21 21 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.74182 * 68.88910 * 11 9 7 23 23 H 1.08995 * 109.66603 * 308.29806 * 11 9 7 24 24 H 1.09001 * 109.68282 * 310.17007 * 12 11 9 25 25 H 1.09000 * 109.68397 * 189.65235 * 12 11 9 26 26 H 1.09001 * 109.25314 * 69.21078 * 13 12 11 27 27 H 1.09003 * 109.25283 * 188.62913 * 13 12 11 28 28 H 1.07997 * 119.67584 * 0.21844 * 15 14 13 29 29 H 1.08007 * 120.15245 * 179.97438 * 16 15 14 30 30 H 0.97006 * 120.00117 * 179.97438 * 18 17 16 31 31 H 0.96993 * 120.00441 * 359.97438 * 18 17 16 32 32 H 1.08003 * 119.75254 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0813 -1.1958 0.0835 9 6 1.2555 -2.4966 -0.1149 10 1 0.3074 -2.3222 -0.6237 11 6 0.9815 -3.0458 1.2844 12 6 0.4168 -4.4643 1.1435 13 6 1.5342 -5.3820 0.6520 14 6 2.2014 -4.7991 -0.5666 15 6 2.9678 -5.6515 -1.3527 16 6 3.6092 -5.1822 -2.4782 17 6 3.4887 -3.8439 -2.8316 18 7 4.1358 -3.3568 -3.9694 19 6 2.7221 -2.9953 -2.0485 20 6 2.0770 -3.4727 -0.9162 21 1 -0.4851 0.8400 0.0004 22 1 0.2565 -2.4109 1.7936 23 1 1.9096 -3.0752 1.8552 24 1 -0.4014 -4.4639 0.4233 25 1 0.0542 -4.8128 2.1106 26 1 2.2739 -5.5032 1.4433 27 1 1.1148 -6.3562 0.4007 28 1 3.0618 -6.6918 -1.0783 29 1 4.2031 -5.8517 -3.0830 30 1 4.0494 -2.4220 -4.2137 31 1 4.6717 -3.9531 -4.5153 32 1 2.6270 -1.9545 -2.3208 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:46 Heat of formation + Delta-G solvation = -18.145600 kcal Electronic energy + Delta-G solvation = -14452.823458 eV Core-core repulsion = 12182.857886 eV Total energy + Delta-G solvation = -2269.965572 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68223 -37.56232 -35.22634 -33.99014 -32.62301 -29.99923 -28.79920 -26.65347 -23.91450 -22.95662 -22.50049 -19.96433 -18.48058 -17.58333 -17.39387 -16.39825 -16.24235 -15.42731 -14.98581 -14.52247 -14.41405 -14.05234 -13.89874 -13.43018 -13.06396 -12.97154 -12.75382 -12.54564 -12.10370 -12.00049 -11.89699 -11.35489 -11.04267 -10.76954 -10.69874 -10.41160 -9.30361 -8.15915 -8.06750 -6.20415 0.81841 0.94071 1.36615 1.38799 1.50556 2.41760 3.16709 3.19254 3.21520 4.11099 4.22332 4.36747 4.40993 4.50438 4.69224 4.79854 4.93959 5.06351 5.07088 5.20418 5.24731 5.28765 5.44697 5.53349 5.61356 5.66340 5.73274 5.85468 5.98864 6.21178 6.27395 6.50514 6.79237 6.93911 7.17619 7.44260 8.96177 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.011845 C = 0.008483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.403992 B = 2363.358654 C = 3299.988972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.508 4.508 8 H 0.044 0.956 9 C 0.063 3.937 10 H 0.026 0.974 11 C -0.094 4.094 12 C -0.116 4.116 13 C -0.059 4.059 14 C -0.167 4.167 15 C -0.079 4.079 16 C -0.213 4.213 17 C 0.197 3.803 18 N -0.873 5.873 19 C -0.207 4.207 20 C -0.021 4.021 21 H 0.261 0.739 22 H 0.030 0.970 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.398 0.602 31 H 0.406 0.594 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 -10.049 -3.901 12.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.045 3.955 10 H 0.044 0.956 11 C -0.132 4.132 12 C -0.153 4.153 13 C -0.096 4.096 14 C -0.169 4.169 15 C -0.097 4.097 16 C -0.235 4.235 17 C 0.093 3.907 18 N -0.414 5.414 19 C -0.230 4.230 20 C -0.022 4.022 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.227 0.773 31 H 0.236 0.764 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.867 -9.948 -3.874 12.182 hybrid contribution 0.264 1.697 -0.307 1.745 sum 6.131 -8.251 -4.181 11.097 Atomic orbital electron populations 1.70068 1.07247 1.27193 1.52051 1.25711 0.95590 1.02289 0.94988 0.85618 0.79069 0.79973 0.77716 1.19322 1.20444 1.20587 1.21291 0.92691 0.91444 1.49161 0.93764 1.17808 0.94249 0.91429 0.92002 0.95640 1.21451 0.98445 0.95072 0.98246 1.21566 0.97772 0.95221 1.00750 1.20281 0.96673 0.98177 0.94491 1.19746 1.03976 0.92953 1.00182 1.21108 0.95209 0.99669 0.93702 1.20670 1.07873 0.93599 1.01381 1.17846 0.91934 0.93054 0.87865 1.42294 1.57580 1.13680 1.27895 1.20655 1.04629 0.99010 0.98678 1.20102 0.94538 0.93721 0.93804 0.92989 0.95147 0.94079 0.93560 0.90690 0.91011 0.89536 0.83788 0.84014 0.77349 0.76400 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 12.84 21.45 0.28 -55.14 16 2 C 0.01 0.69 5.45 84.66 0.46 1.16 16 3 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.51 -28.87 6.88 25.60 0.18 -28.69 16 8 H 0.04 2.55 7.82 -2.91 -0.02 2.53 16 9 C 0.06 3.35 2.24 -12.37 -0.03 3.32 16 10 H 0.03 1.54 7.38 -2.38 -0.02 1.52 16 11 C -0.09 -4.43 5.24 30.64 0.16 -4.27 16 12 C -0.12 -4.30 5.97 30.61 0.18 -4.12 16 13 C -0.06 -1.94 5.67 29.74 0.17 -1.77 16 14 C -0.17 -6.39 5.74 -19.82 -0.11 -6.50 16 15 C -0.08 -2.48 9.60 22.34 0.21 -2.26 16 16 C -0.21 -6.53 9.90 22.33 0.22 -6.31 16 17 C 0.20 6.93 6.75 38.15 0.26 7.18 16 18 N -0.87 -23.22 9.09 -51.54 -0.47 -23.69 16 19 C -0.21 -9.16 8.89 22.49 0.20 -8.96 16 20 C -0.02 -0.96 5.42 -19.87 -0.11 -1.07 16 21 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 22 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.04 1.91 8.08 -2.39 -0.02 1.89 16 24 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 28 H 0.14 3.44 8.05 -2.91 -0.02 3.42 16 29 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.40 10.17 8.85 -92.70 -0.82 9.35 16 31 H 0.41 7.99 8.85 -92.71 -0.82 7.17 16 32 H 0.10 4.66 7.26 -2.91 -0.02 4.64 16 Total: -1.00 -65.51 263.84 3.11 -62.40 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.51 Total: 21.93 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 1.79 Total: -52.30 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -0.19 Total: -78.83 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.51 3.11 -62.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.251 kcal (2) G-P(sol) polarization free energy of solvation -65.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds