Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50708 * 109.47273 * 2 1 4 4 C 1.40201 * 120.33515 * 89.99991 * 3 2 1 5 5 N 1.31267 * 120.43312 * 180.02562 * 4 3 2 6 6 C 1.34213 * 121.01021 * 359.97399 * 5 4 3 7 7 N 1.32395 * 131.24110 * 180.34156 * 6 5 4 8 8 C 1.34887 * 109.26017 * 180.10018 * 7 6 5 9 9 C 1.41201 * 126.16931 * 179.86134 * 8 7 6 10 10 H 1.08002 * 119.99636 * 185.89783 * 9 8 7 11 11 C 1.39760 * 120.00157 * 5.89438 * 9 8 7 12 12 N 1.30954 * 119.99803 * 183.54031 * 11 9 8 13 13 Si 1.86800 * 119.99913 * 3.53541 * 11 9 8 14 14 H 1.48503 * 109.46735 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47237 * 299.99995 * 13 11 9 16 16 H 1.48500 * 109.46842 * 60.00448 * 13 11 9 17 17 C 1.39383 * 107.65730 * 359.59085 * 8 7 6 18 18 N 1.36145 * 106.62898 * 0.24919 * 17 8 7 19 19 C 1.35558 * 120.33397 * 269.99787 * 3 2 1 20 20 H 1.08999 * 109.46786 * 300.00079 * 1 2 3 21 21 H 1.09000 * 109.46907 * 59.99998 * 1 2 3 22 22 H 1.08996 * 109.47001 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47632 * 239.99917 * 2 1 3 24 24 H 1.09001 * 109.47587 * 119.99687 * 2 1 3 25 25 H 1.08004 * 119.78182 * 0.02562 * 4 3 2 26 26 H 0.96997 * 120.00497 * 354.78557 * 12 11 9 27 27 H 1.07997 * 126.68738 * 180.27702 * 17 8 7 28 28 H 1.08004 * 120.44747 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2684 2.0885 1.2101 5 7 2.7056 3.3262 1.2123 6 6 2.9367 3.9800 0.0632 7 7 3.3763 5.2069 -0.1698 8 6 3.4430 5.4103 -1.5015 9 6 3.8628 6.5958 -2.1435 10 1 3.7875 6.6842 -3.2172 11 6 4.3757 7.6549 -1.3894 12 7 4.7003 8.7796 -1.9763 13 14 4.5981 7.4659 0.4557 14 1 5.1547 8.7225 1.0183 15 1 3.2843 7.1801 1.0859 16 1 5.5329 6.3450 0.7293 17 6 3.0285 4.2371 -2.1297 18 7 2.7162 3.3551 -1.1407 19 6 2.2607 2.0663 -1.1700 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 2.0895 1.5810 2.1465 26 1 4.6565 8.8528 -2.9426 27 1 2.9674 4.0617 -3.1936 28 1 2.0845 1.5694 -2.1126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261306667.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = 73.270343 kcal Electronic energy + Delta-G solvation = -13889.719409 eV Core-core repulsion = 11520.177586 eV Total energy + Delta-G solvation = -2369.541822 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.73056 -37.70622 -34.24789 -33.97144 -32.78767 -29.26478 -28.29662 -26.07279 -23.49429 -23.11473 -21.32618 -19.86285 -18.43094 -17.35237 -16.28604 -15.35200 -15.20768 -14.12777 -13.98497 -13.69686 -13.38285 -12.97222 -12.65122 -12.30230 -12.10190 -11.50972 -11.46958 -11.26148 -11.08432 -10.53282 -10.24064 -9.63380 -9.34101 -9.18107 -8.22811 -8.09355 -7.29245 -7.16168 -4.64422 1.28266 1.84014 3.33411 3.45249 3.67171 3.97270 4.06504 4.42024 4.44637 4.57147 4.82551 4.93431 5.05937 5.29427 5.32515 5.37408 5.59720 5.70963 5.82060 5.99383 6.14880 6.25873 6.40203 6.66396 6.81503 7.16236 7.44449 7.54901 8.11962 8.23819 8.51824 8.65336 9.16104 10.08238 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.060032 B = 0.008242 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.302681 B = 3396.584228 C = 3770.381543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.057 4.057 3 C -0.208 4.208 4 C 0.133 3.867 5 N -0.458 5.458 6 C 0.388 3.612 7 N -0.536 5.536 8 C 0.231 3.769 9 C -0.471 4.471 10 H 0.086 0.914 11 C 0.050 3.950 12 N -0.814 5.814 13 Si 1.118 2.882 14 H -0.315 1.315 15 H -0.264 1.264 16 H -0.283 1.283 17 C -0.242 4.242 18 N -0.357 5.357 19 C 0.083 3.917 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.161 0.839 26 H 0.282 0.718 27 H 0.163 0.837 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -14.654 1.684 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.216 4.216 4 C -0.047 4.047 5 N -0.173 5.173 6 C 0.041 3.959 7 N -0.270 5.270 8 C 0.107 3.893 9 C -0.504 4.504 10 H 0.104 0.896 11 C -0.171 4.171 12 N -0.437 5.437 13 Si 0.948 3.052 14 H -0.246 1.246 15 H -0.190 1.190 16 H -0.210 1.210 17 C -0.372 4.372 18 N -0.032 5.032 19 C -0.054 4.054 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.179 0.821 26 H 0.093 0.907 27 H 0.181 0.819 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.676 -12.531 4.165 14.008 hybrid contribution -0.892 -1.930 -3.171 3.818 sum -5.568 -14.461 0.994 15.527 Atomic orbital electron populations 1.21795 0.95201 1.01272 1.02286 1.20156 0.95603 0.91147 1.02665 1.19927 1.09961 0.98900 0.92799 1.22688 0.95282 0.89432 0.97315 1.67820 1.16149 1.09250 1.24044 1.22046 1.02299 0.90913 0.80653 1.70155 1.29609 1.10926 1.16284 1.18736 0.91396 0.92638 0.86503 1.19935 1.37176 0.97235 0.96073 0.89598 1.27460 0.89504 0.90250 1.09852 1.70715 1.34347 1.24830 1.13824 0.82597 0.79346 0.72567 0.70713 1.24584 1.18987 1.20997 1.22544 1.30108 0.92145 0.92452 1.43520 1.38941 1.09559 1.11212 1.21619 0.99773 0.84138 0.99828 0.92464 0.92835 0.92620 0.91422 0.90757 0.82139 0.90663 0.81944 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 37.16 0.37 -0.98 15 2 C -0.06 -0.56 6.08 -27.88 -0.17 -0.73 15 3 C -0.21 -3.03 5.12 -104.84 -0.54 -3.57 15 4 C 0.13 2.21 10.96 -17.06 -0.19 2.02 15 5 N -0.46 -10.16 10.48 -13.62 -0.14 -10.31 15 6 C 0.39 9.70 8.88 -322.10 -2.86 6.84 15 7 N -0.54 -14.97 6.51 -12.00 -0.08 -15.04 15 8 C 0.23 6.30 6.40 -84.97 -0.54 5.75 15 9 C -0.47 -13.14 9.81 -37.89 -0.37 -13.52 15 10 H 0.09 2.34 8.05 -52.49 -0.42 1.92 15 11 C 0.05 1.39 5.51 -17.36 -0.10 1.30 15 12 N -0.81 -22.75 13.66 55.54 0.76 -21.99 15 13 Si 1.12 29.28 25.83 -169.99 -4.39 24.89 15 14 H -0.32 -7.95 7.11 56.52 0.40 -7.55 15 15 H -0.26 -7.11 6.76 56.52 0.38 -6.73 15 16 H -0.28 -7.56 7.11 56.52 0.40 -7.16 15 17 C -0.24 -5.72 11.81 -15.21 -0.18 -5.89 15 18 N -0.36 -7.91 2.93 -63.25 -0.19 -8.09 15 19 C 0.08 1.39 10.69 -16.33 -0.17 1.21 15 20 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 15 23 H 0.07 0.59 8.08 -51.93 -0.42 0.17 15 24 H 0.07 0.63 8.10 -51.93 -0.42 0.20 15 25 H 0.16 1.98 8.06 -52.48 -0.42 1.56 15 26 H 0.28 7.49 8.72 -40.82 -0.36 7.13 15 27 H 0.16 3.35 8.06 -52.49 -0.42 2.92 15 28 H 0.15 2.02 8.06 -52.48 -0.42 1.60 15 LS Contribution 247.12 15.07 3.72 3.72 Total: -1.00 -32.08 247.12 -8.04 -40.12 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: -2.97 Total: -5.73 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -4.75 Total: -7.57 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.35 Total: -55.43 kcal Atomic # 14 Polarization: 29.28 SS G_CDS: -4.39 Total: 24.89 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.08 -8.04 -40.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261306667.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.389 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds