Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50708 * 109.47273 * 2 1 4 4 C 1.40201 * 120.33515 * 89.99991 * 3 2 1 5 5 N 1.31267 * 120.43312 * 180.02562 * 4 3 2 6 6 C 1.34213 * 121.01021 * 359.97399 * 5 4 3 7 7 N 1.32395 * 131.24110 * 180.34156 * 6 5 4 8 8 C 1.34887 * 109.26017 * 180.10018 * 7 6 5 9 9 C 1.41201 * 126.16931 * 179.86134 * 8 7 6 10 10 H 1.08002 * 119.99636 * 185.89783 * 9 8 7 11 11 C 1.39760 * 120.00157 * 5.89438 * 9 8 7 12 12 N 1.30954 * 119.99803 * 183.54031 * 11 9 8 13 13 Si 1.86800 * 119.99913 * 3.53541 * 11 9 8 14 14 H 1.48503 * 109.46735 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47237 * 299.99995 * 13 11 9 16 16 H 1.48500 * 109.46842 * 60.00448 * 13 11 9 17 17 C 1.39383 * 107.65730 * 359.59085 * 8 7 6 18 18 N 1.36145 * 106.62898 * 0.24919 * 17 8 7 19 19 C 1.35558 * 120.33397 * 269.99787 * 3 2 1 20 20 H 1.08999 * 109.46786 * 300.00079 * 1 2 3 21 21 H 1.09000 * 109.46907 * 59.99998 * 1 2 3 22 22 H 1.08996 * 109.47001 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47632 * 239.99917 * 2 1 3 24 24 H 1.09001 * 109.47587 * 119.99687 * 2 1 3 25 25 H 1.08004 * 119.78182 * 0.02562 * 4 3 2 26 26 H 0.96997 * 120.00497 * 354.78557 * 12 11 9 27 27 H 1.07997 * 126.68738 * 180.27702 * 17 8 7 28 28 H 1.08004 * 120.44747 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2684 2.0885 1.2101 5 7 2.7056 3.3262 1.2123 6 6 2.9367 3.9800 0.0632 7 7 3.3763 5.2069 -0.1698 8 6 3.4430 5.4103 -1.5015 9 6 3.8628 6.5958 -2.1435 10 1 3.7875 6.6842 -3.2172 11 6 4.3757 7.6549 -1.3894 12 7 4.7003 8.7796 -1.9763 13 14 4.5981 7.4659 0.4557 14 1 5.1547 8.7225 1.0183 15 1 3.2843 7.1801 1.0859 16 1 5.5329 6.3450 0.7293 17 6 3.0285 4.2371 -2.1297 18 7 2.7162 3.3551 -1.1407 19 6 2.2607 2.0663 -1.1700 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 2.0895 1.5810 2.1465 26 1 4.6565 8.8528 -2.9426 27 1 2.9674 4.0617 -3.1936 28 1 2.0845 1.5694 -2.1126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261306667.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = 54.421750 kcal Electronic energy + Delta-G solvation = -13890.536745 eV Core-core repulsion = 11520.177586 eV Total energy + Delta-G solvation = -2370.359159 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.42771 -39.27760 -35.83770 -35.59427 -34.41134 -30.83636 -29.85848 -27.75363 -24.76318 -24.71144 -22.73099 -21.63047 -20.33639 -18.99811 -17.90650 -16.98697 -16.67233 -15.82253 -15.46165 -15.05367 -14.73512 -14.35608 -14.19945 -14.07643 -13.62605 -13.12974 -13.01273 -12.52180 -12.33060 -12.01094 -11.82720 -11.67998 -11.26142 -10.87512 -10.14856 -9.78607 -9.33114 -8.96795 -6.67064 -0.16252 0.29045 1.42831 1.49902 1.76251 2.01247 2.04859 2.41044 2.71576 2.94935 3.25408 3.57982 3.68883 3.98671 4.17549 4.36438 4.58604 4.64261 4.79280 4.92244 5.04049 5.07524 5.18982 5.34351 5.43102 5.48963 5.55806 5.77915 6.16178 6.34794 6.66653 6.87445 7.32902 8.04650 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.060032 B = 0.008242 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.302681 B = 3396.584228 C = 3770.381543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C -0.182 4.182 4 C 0.159 3.841 5 N -0.495 5.495 6 C 0.360 3.640 7 N -0.579 5.579 8 C 0.200 3.800 9 C -0.510 4.510 10 H 0.075 0.925 11 C 0.023 3.977 12 N -0.846 5.846 13 Si 1.158 2.842 14 H -0.305 1.305 15 H -0.282 1.282 16 H -0.298 1.298 17 C -0.237 4.237 18 N -0.371 5.371 19 C 0.086 3.914 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.102 0.898 25 H 0.213 0.787 26 H 0.281 0.719 27 H 0.189 0.811 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.195 -19.584 2.698 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.189 4.189 4 C -0.022 4.022 5 N -0.210 5.210 6 C 0.013 3.987 7 N -0.314 5.314 8 C 0.075 3.925 9 C -0.545 4.545 10 H 0.094 0.906 11 C -0.192 4.192 12 N -0.472 5.472 13 Si 0.989 3.011 14 H -0.235 1.235 15 H -0.209 1.209 16 H -0.226 1.226 17 C -0.366 4.366 18 N -0.046 5.046 19 C -0.047 4.047 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.108 0.892 24 H 0.120 0.880 25 H 0.230 0.770 26 H 0.091 0.909 27 H 0.206 0.794 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.312 -17.481 5.145 19.285 hybrid contribution -0.663 -1.123 -3.257 3.508 sum -6.975 -18.604 1.888 19.958 Atomic orbital electron populations 1.21800 0.94282 1.02826 1.01691 1.20365 0.96051 0.87470 1.05306 1.20692 1.06054 1.00930 0.91199 1.23845 0.90450 0.87525 1.00418 1.67929 1.18113 1.11652 1.23288 1.22093 1.03297 0.90965 0.82367 1.69885 1.31055 1.13467 1.16947 1.18886 0.92898 0.93743 0.87017 1.19841 1.40359 0.98622 0.95661 0.90639 1.27874 0.89648 0.90508 1.11138 1.70715 1.37534 1.25214 1.13718 0.82002 0.77798 0.71982 0.69361 1.23546 1.20912 1.22570 1.22723 1.28876 0.91428 0.93590 1.43501 1.40260 1.11178 1.09687 1.22679 0.97145 0.82051 1.02865 0.92902 0.93722 0.90141 0.89176 0.87963 0.77049 0.90876 0.79431 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 71.98 0.71 -1.02 15 2 C -0.05 -0.65 6.08 29.85 0.18 -0.47 15 3 C -0.18 -4.20 5.12 -20.01 -0.10 -4.30 15 4 C 0.16 4.43 10.96 85.25 0.93 5.37 15 5 N -0.49 -20.79 10.48 -196.99 -2.06 -22.86 15 6 C 0.36 17.81 8.88 261.24 2.32 20.13 15 7 N -0.58 -33.30 6.51 -191.87 -1.25 -34.55 15 8 C 0.20 11.28 6.40 39.68 0.25 11.54 15 9 C -0.51 -30.29 9.81 23.37 0.23 -30.06 15 10 H 0.08 4.43 8.05 -2.91 -0.02 4.40 15 11 C 0.02 1.39 5.51 85.19 0.47 1.86 15 12 N -0.85 -50.05 13.66 21.80 0.30 -49.75 15 13 Si 1.16 63.31 25.83 68.60 1.77 65.08 15 14 H -0.31 -15.72 7.11 99.48 0.71 -15.01 15 15 H -0.28 -15.95 6.76 99.48 0.67 -15.28 15 16 H -0.30 -16.64 7.11 99.48 0.71 -15.93 15 17 C -0.24 -11.19 11.81 84.30 1.00 -10.19 15 18 N -0.37 -15.68 2.93 -354.03 -1.04 -16.71 15 19 C 0.09 2.47 10.69 83.31 0.89 3.36 15 20 H 0.05 0.68 8.14 -2.39 -0.02 0.66 15 21 H 0.04 0.62 8.14 -2.39 -0.02 0.60 15 22 H 0.08 0.63 8.14 -2.39 -0.02 0.61 15 23 H 0.09 0.84 8.08 -2.39 -0.02 0.82 15 24 H 0.10 0.83 8.10 -2.39 -0.02 0.82 15 25 H 0.21 3.66 8.06 -2.91 -0.02 3.64 15 26 H 0.28 15.91 8.72 -92.71 -0.81 15.10 15 27 H 0.19 7.56 8.06 -2.91 -0.02 7.54 15 28 H 0.20 3.91 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -76.40 247.12 5.69 -70.71 By element: Atomic # 1 Polarization: -9.22 SS G_CDS: 1.09 Total: -8.13 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 6.89 Total: -3.79 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -4.05 Total: -123.87 kcal Atomic # 14 Polarization: 63.31 SS G_CDS: 1.77 Total: 65.08 kcal Total: -76.40 5.69 -70.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261306667.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.135 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds