Wall clock time and date at job start Mon Mar 30 2020 03:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48511 * 109.46792 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47323 * 300.00108 * 3 2 1 6 6 H 1.48495 * 109.47206 * 60.00648 * 3 2 1 7 7 C 1.37878 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99264 * 185.09152 * 7 2 1 9 9 C 1.50693 * 120.00412 * 5.09591 * 7 2 1 10 10 H 1.08998 * 109.24755 * 25.40698 * 9 7 2 11 11 C 1.52731 * 109.25151 * 265.98406 * 9 7 2 12 12 C 1.53320 * 108.38095 * 188.58443 * 11 9 7 13 13 C 1.52729 * 108.37659 * 69.91383 * 12 11 9 14 14 C 1.50644 * 110.59547 * 308.89176 * 13 12 11 15 15 C 1.38788 * 117.68820 * 197.53641 * 14 13 12 16 16 C 1.38602 * 120.49085 * 180.38298 * 15 14 13 17 17 N 1.39681 * 120.19220 * 180.22674 * 16 15 14 18 18 C 1.38938 * 119.61606 * 359.95087 * 16 15 14 19 19 C 1.37786 * 119.68751 * 359.90067 * 18 16 15 20 20 C 1.37735 * 122.55956 * 17.71807 * 14 13 12 21 21 H 0.96995 * 119.99662 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.68076 * 308.30360 * 11 9 7 23 23 H 1.08994 * 109.68112 * 68.85633 * 11 9 7 24 24 H 1.09003 * 109.68470 * 189.63070 * 12 11 9 25 25 H 1.09000 * 109.68344 * 310.15187 * 12 11 9 26 26 H 1.08992 * 109.25479 * 69.18556 * 13 12 11 27 27 H 1.09004 * 109.24935 * 188.64630 * 13 12 11 28 28 H 1.08000 * 119.75568 * 0.40418 * 15 14 13 29 29 H 0.97001 * 119.99986 * 179.72809 * 17 16 15 30 30 H 0.96998 * 120.00210 * 359.71938 * 17 16 15 31 31 H 1.07994 * 120.15953 * 179.87391 * 18 16 15 32 32 H 1.08004 * 119.67330 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1959 0.0825 9 6 1.2555 -2.4965 -0.1170 10 1 0.3075 -2.3216 -0.6256 11 6 0.9818 -3.0469 1.2812 12 6 0.4162 -4.4650 1.1404 13 6 1.5336 -5.3823 0.6479 14 6 2.1994 -4.7991 -0.5711 15 6 2.9640 -5.6496 -1.3574 16 6 3.6088 -5.1726 -2.4877 17 7 4.3729 -6.0351 -3.2772 18 6 3.4860 -3.8327 -2.8342 19 6 2.7234 -2.9928 -2.0523 20 6 2.0770 -3.4721 -0.9191 21 1 -0.4849 0.8400 0.0004 22 1 1.9100 -3.0768 1.8520 23 1 0.2574 -2.4114 1.7904 24 1 0.0546 -4.8137 2.1077 25 1 -0.4027 -4.4639 0.4210 26 1 2.2739 -5.5034 1.4385 27 1 1.1141 -6.3564 0.3961 28 1 3.0570 -6.6910 -1.0866 29 1 4.8197 -5.6991 -4.0699 30 1 4.4568 -6.9700 -3.0327 31 1 3.9863 -3.4512 -3.7120 32 1 2.6277 -1.9513 -2.3221 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261311270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:19 Heat of formation + Delta-G solvation = -17.592476 kcal Electronic energy + Delta-G solvation = -14393.049412 eV Core-core repulsion = 12123.107825 eV Total energy + Delta-G solvation = -2269.941587 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69531 -37.59475 -34.97975 -34.29371 -32.50180 -30.20860 -28.48690 -26.80620 -23.87791 -22.95494 -22.51963 -19.97378 -18.46410 -17.48812 -17.36479 -16.73314 -16.03871 -15.40276 -14.95360 -14.55864 -14.38108 -14.06030 -13.86182 -13.60404 -13.07151 -12.94011 -12.73932 -12.51755 -12.20489 -11.89478 -11.86572 -11.35954 -11.07546 -10.76513 -10.63329 -10.37066 -9.37695 -8.22996 -7.94806 -6.17762 0.72580 0.98752 1.38316 1.40375 1.52164 2.43784 3.18217 3.19237 3.19980 4.04589 4.20944 4.33910 4.39348 4.54945 4.68287 4.75613 4.90502 5.03828 5.04430 5.18142 5.22822 5.37705 5.44831 5.48362 5.55095 5.67306 5.71680 5.89179 6.02151 6.24477 6.29168 6.51257 6.81849 6.97817 7.20290 7.47188 8.98597 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029818 B = 0.010169 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.794057 B = 2752.841818 C = 3504.708750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.509 4.509 8 H 0.045 0.955 9 C 0.072 3.928 10 H 0.020 0.980 11 C -0.095 4.095 12 C -0.115 4.115 13 C -0.069 4.069 14 C -0.057 4.057 15 C -0.208 4.208 16 C 0.198 3.802 17 N -0.870 5.870 18 C -0.212 4.212 19 C -0.078 4.078 20 C -0.124 4.124 21 H 0.261 0.739 22 H 0.040 0.960 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.403 0.597 30 H 0.405 0.595 31 H 0.128 0.872 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 -12.077 -3.261 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.054 3.946 10 H 0.038 0.962 11 C -0.133 4.133 12 C -0.152 4.152 13 C -0.105 4.105 14 C -0.058 4.058 15 C -0.231 4.231 16 C 0.094 3.906 17 N -0.412 5.412 18 C -0.234 4.234 19 C -0.097 4.097 20 C -0.126 4.126 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.156 0.844 29 H 0.232 0.768 30 H 0.235 0.765 31 H 0.146 0.854 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.990 -11.932 -3.244 13.739 hybrid contribution 0.323 1.338 -0.245 1.398 sum 6.313 -10.593 -3.489 12.816 Atomic orbital electron populations 1.70076 1.07259 1.27125 1.52210 1.25725 0.95588 1.02296 0.95077 0.85639 0.79152 0.80064 0.77668 1.19240 1.20533 1.20592 1.21375 0.92766 0.91642 1.48934 0.93708 1.17650 0.93990 0.91226 0.91743 0.96214 1.21451 0.98373 0.94989 0.98513 1.21560 0.97622 0.95191 1.00849 1.20431 0.97104 0.98486 0.94519 1.19702 0.97018 0.92270 0.96813 1.20650 1.04749 1.00292 0.97398 1.17620 0.91719 0.89926 0.91320 1.42211 1.57241 1.11162 1.30562 1.20648 1.06581 0.92995 1.03214 1.21031 0.95522 0.98838 0.94328 1.20110 1.01072 0.94156 0.97263 0.93046 0.94098 0.95254 0.90520 0.93463 0.90202 0.89058 0.84381 0.76777 0.76539 0.85415 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 12.84 21.45 0.28 -55.54 16 2 C 0.01 0.63 5.45 84.65 0.46 1.09 16 3 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.51 -29.03 6.87 25.60 0.18 -28.85 16 8 H 0.04 2.58 7.82 -2.91 -0.02 2.56 16 9 C 0.07 3.82 2.24 -12.39 -0.03 3.79 16 10 H 0.02 1.19 7.38 -2.39 -0.02 1.18 16 11 C -0.10 -4.47 5.24 30.61 0.16 -4.31 16 12 C -0.11 -4.22 5.98 30.61 0.18 -4.04 16 13 C -0.07 -2.21 5.67 29.74 0.17 -2.04 16 14 C -0.06 -2.19 5.74 -19.87 -0.11 -2.30 16 15 C -0.21 -6.63 9.46 22.49 0.21 -6.42 16 16 C 0.20 6.11 6.75 38.15 0.26 6.37 16 17 N -0.87 -18.00 9.09 -51.54 -0.47 -18.47 16 18 C -0.21 -7.58 9.90 22.33 0.22 -7.36 16 19 C -0.08 -3.48 9.03 22.34 0.20 -3.28 16 20 C -0.12 -5.73 5.42 -19.82 -0.11 -5.84 16 21 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 22 H 0.04 1.89 8.08 -2.38 -0.02 1.87 16 23 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 26 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.09 2.37 8.12 -2.38 -0.02 2.35 16 28 H 0.14 3.44 8.05 -2.91 -0.02 3.41 16 29 H 0.40 6.80 8.85 -92.71 -0.82 5.97 16 30 H 0.41 6.35 8.84 -92.71 -0.82 5.53 16 31 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 32 H 0.10 4.80 7.26 -2.91 -0.02 4.78 16 Total: -1.00 -65.92 263.83 3.11 -62.81 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.51 Total: 17.33 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 1.79 Total: -53.20 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -0.19 Total: -74.01 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -65.92 3.11 -62.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261311270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.218 kcal (2) G-P(sol) polarization free energy of solvation -65.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds