Wall clock time and date at job start Mon Mar 30 2020 03:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99829 * 2 1 4 4 H 1.48500 * 109.47320 * 269.99977 * 3 2 1 5 5 H 1.48497 * 109.47298 * 30.00191 * 3 2 1 6 6 H 1.48505 * 109.46630 * 150.00070 * 3 2 1 7 7 C 1.37873 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99624 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00149 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.21822 * 55.02613 * 9 7 2 11 11 C 1.52729 * 109.25368 * 295.57553 * 9 7 2 12 12 C 1.53314 * 108.33892 * 188.62342 * 11 9 7 13 13 C 1.52740 * 108.39038 * 69.88266 * 12 11 9 14 14 C 1.50638 * 110.56531 * 308.84209 * 13 12 11 15 15 C 1.38981 * 117.72525 * 197.75482 * 14 13 12 16 16 C 1.37977 * 120.71171 * 180.23846 * 15 14 13 17 17 C 1.38131 * 119.84840 * 0.04567 * 16 15 14 18 18 C 1.38613 * 119.69116 * 359.87752 * 17 16 15 19 19 N 1.39673 * 119.80331 * 179.97438 * 18 17 16 20 20 C 1.37525 * 122.55458 * 17.81105 * 14 13 12 21 21 H 0.97002 * 119.99941 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.68429 * 308.36300 * 11 9 7 23 23 H 1.09002 * 109.68520 * 68.88566 * 11 9 7 24 24 H 1.08998 * 109.71068 * 310.14649 * 12 11 9 25 25 H 1.08995 * 109.65437 * 189.58811 * 12 11 9 26 26 H 1.08995 * 109.24993 * 188.57378 * 13 12 11 27 27 H 1.09001 * 109.24582 * 69.11059 * 13 12 11 28 28 H 1.08007 * 119.64398 * 0.26693 * 15 14 13 29 29 H 1.07998 * 120.07527 * 180.02562 * 16 15 14 30 30 H 1.08008 * 120.15106 * 179.90367 * 17 16 15 31 31 H 0.97006 * 120.00014 * 157.53608 * 19 18 17 32 32 H 0.96999 * 120.00519 * 337.53380 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5603 -2.5147 -0.8437 11 6 0.4606 -2.6243 1.3003 12 6 -0.1205 -4.0410 1.3773 13 6 1.0285 -5.0215 1.6035 14 6 2.1223 -4.7974 0.5922 15 6 3.0501 -5.8154 0.4069 16 6 4.0802 -5.6735 -0.5000 17 6 4.1951 -4.5086 -1.2332 18 6 3.2716 -3.4905 -1.0538 19 7 3.3858 -2.3113 -1.7936 20 6 2.2284 -3.6370 -0.1382 21 1 -0.4850 0.8401 0.0004 22 1 1.1216 -2.4514 2.1496 23 1 -0.3485 -1.8940 1.3101 24 1 -0.6292 -4.2808 0.4436 25 1 -0.8251 -4.1037 2.2065 26 1 0.6548 -6.0410 1.5087 27 1 1.4311 -4.8781 2.6062 28 1 2.9636 -6.7276 0.9787 29 1 4.7953 -6.4714 -0.6360 30 1 5.0004 -4.3917 -1.9434 31 1 2.6087 -1.7468 -1.9294 32 1 4.2421 -2.0568 -2.1715 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:52 Heat of formation + Delta-G solvation = 11.380081 kcal Electronic energy + Delta-G solvation = -14769.583212 eV Core-core repulsion = 12500.897970 eV Total energy + Delta-G solvation = -2268.685242 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27766 -35.35651 -34.40169 -32.16833 -29.55705 -29.23425 -27.11349 -24.75562 -22.02686 -21.77618 -20.40333 -18.34586 -16.65636 -15.66655 -15.58921 -14.91921 -14.31992 -13.79393 -13.67281 -12.83031 -12.78172 -12.51627 -12.01367 -11.49314 -11.40530 -11.15376 -10.95691 -10.75426 -10.61825 -10.34340 -10.00129 -9.62138 -9.31458 -9.08354 -8.69473 -8.40016 -7.62229 -6.46008 -6.03562 -4.06511 2.30181 2.47318 3.24494 3.33696 3.37458 4.38150 4.71440 4.96257 5.31263 5.53625 5.62940 5.90124 5.91767 6.00886 6.14554 6.27198 6.39773 6.55342 6.68280 6.76239 6.85127 6.92244 7.13707 7.21026 7.29575 7.41384 7.59139 7.73862 7.85862 7.94091 8.04128 8.41715 8.61380 8.93543 9.01295 9.54800 11.01818 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.012138 C = 0.009224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.424454 B = 2306.173133 C = 3034.814877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.082 3.918 10 H 0.036 0.964 11 C -0.101 4.101 12 C -0.123 4.123 13 C -0.072 4.072 14 C -0.054 4.054 15 C -0.190 4.190 16 C -0.097 4.097 17 C -0.221 4.221 18 C 0.227 3.773 19 N -0.867 5.867 20 C -0.104 4.104 21 H 0.260 0.740 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.416 0.584 32 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 -6.760 -0.426 7.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.089 0.911 9 C 0.064 3.936 10 H 0.054 0.946 11 C -0.139 4.139 12 C -0.160 4.160 13 C -0.110 4.110 14 C -0.055 4.055 15 C -0.211 4.211 16 C -0.116 4.116 17 C -0.244 4.244 18 C 0.121 3.879 19 N -0.410 5.410 20 C -0.108 4.108 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.253 0.747 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.347 -6.632 -0.420 7.440 hybrid contribution 0.653 1.205 -0.128 1.376 sum 4.000 -5.427 -0.548 6.764 Atomic orbital electron populations 1.69934 1.05853 1.26482 1.50306 1.25010 0.94789 0.98936 0.95411 0.86652 0.79961 0.83739 0.77997 1.20814 1.21369 1.20006 1.21416 0.93841 0.89694 1.49869 0.91087 1.17605 0.91679 0.89729 0.94582 0.94591 1.21524 1.00296 0.93278 0.98757 1.21659 0.96400 0.97769 1.00212 1.20394 0.94582 0.98742 0.97233 1.19411 0.95898 0.93168 0.96989 1.20701 0.98049 0.99327 1.02990 1.20487 0.97723 0.96625 0.96767 1.20474 1.03322 0.94802 1.05833 1.17784 0.93749 0.86274 0.90114 1.43188 1.14011 1.24607 1.59225 1.19987 0.99113 0.96258 0.95479 0.93008 0.94105 0.90055 0.92750 0.93451 0.92403 0.91748 0.87996 0.87747 0.87716 0.74733 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 11.75 55.43 0.65 -23.57 16 2 C 0.06 1.58 5.32 -17.82 -0.09 1.48 16 3 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.06 5.68 -34.44 -0.20 -13.25 16 8 H 0.07 1.84 6.18 -52.49 -0.32 1.52 16 9 C 0.08 2.00 1.72 -93.10 -0.16 1.84 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.10 -2.34 4.96 -26.71 -0.13 -2.48 16 12 C -0.12 -2.39 5.97 -26.70 -0.16 -2.55 16 13 C -0.07 -1.31 5.67 -28.05 -0.16 -1.47 16 14 C -0.05 -1.09 5.73 -104.64 -0.60 -1.69 16 15 C -0.19 -3.46 9.60 -39.40 -0.38 -3.84 16 16 C -0.10 -1.70 10.04 -39.72 -0.40 -2.09 16 17 C -0.22 -4.08 9.92 -39.48 -0.39 -4.47 16 18 C 0.23 4.72 6.31 -83.65 -0.53 4.19 16 19 N -0.87 -16.88 7.09 32.48 0.23 -16.65 16 20 C -0.10 -2.33 5.43 -104.42 -0.57 -2.90 16 21 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 22 H 0.04 0.97 8.08 -51.93 -0.42 0.56 16 23 H 0.08 2.07 6.67 -51.93 -0.35 1.72 16 24 H 0.05 1.07 8.10 -51.93 -0.42 0.65 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.10 1.60 8.05 -52.48 -0.42 1.18 16 29 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.42 8.84 6.23 -40.82 -0.25 8.59 16 32 H 0.38 6.20 8.89 -40.82 -0.36 5.84 16 LS Contribution 255.22 15.07 3.85 3.85 Total: -1.00 -27.11 255.22 -8.28 -35.39 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.22 Total: 12.70 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -3.76 Total: -27.21 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.88 Total: -40.21 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.11 -8.28 -35.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.773 kcal (2) G-P(sol) polarization free energy of solvation -27.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds