Wall clock time and date at job start Mon Mar 30 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.46174 * 54.99537 * 10 9 7 12 12 N 1.46849 * 109.45787 * 295.01662 * 10 9 7 13 13 C 1.46848 * 111.19515 * 178.24035 * 12 10 9 14 14 C 1.53042 * 109.52118 * 61.74357 * 13 12 10 15 15 H 1.08997 * 109.50233 * 180.83971 * 14 13 12 16 16 O 1.42898 * 109.50547 * 60.76245 * 14 13 12 17 17 C 1.53121 * 109.27938 * 300.81898 * 14 13 12 18 18 H 1.08994 * 109.51982 * 297.75130 * 17 14 13 19 19 O 1.42891 * 109.52263 * 177.62268 * 17 14 13 20 20 C 1.53033 * 109.46238 * 174.97422 * 10 9 7 21 21 H 1.08993 * 109.50643 * 299.13402 * 20 10 9 22 22 O 1.42901 * 109.50231 * 59.25474 * 20 10 9 23 23 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 25 25 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 26 26 H 1.00895 * 110.99932 * 54.15003 * 12 10 9 27 27 H 1.08997 * 109.46518 * 181.75830 * 13 12 10 28 28 H 1.08998 * 109.46350 * 301.72892 * 13 12 10 29 29 H 0.96703 * 114.00188 * 59.99561 * 16 14 13 30 30 H 0.96705 * 113.99960 * 60.00113 * 19 17 14 31 31 H 0.96703 * 114.00129 * 179.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9295 -3.5550 0.8424 12 7 3.0083 -3.6534 -1.2542 13 6 4.0051 -4.7315 -1.2769 14 6 3.2965 -6.0851 -1.1884 15 1 4.0375 -6.8845 -1.1903 16 8 2.4238 -6.2409 -2.3091 17 6 2.4816 -6.1454 0.1065 18 1 3.1515 -6.0656 0.9625 19 8 1.7738 -7.3851 0.1679 20 6 1.4843 -4.9837 0.1269 21 1 0.9304 -4.9963 1.0655 22 8 0.5743 -5.1166 -0.9668 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6242 -2.5567 0.8904 25 1 0.6248 -2.5571 -0.8896 26 1 3.4431 -2.7557 -1.4068 27 1 4.5749 -4.6798 -2.2047 28 1 4.6809 -4.6192 -0.4292 29 1 2.8730 -6.2097 -3.1649 30 1 2.3450 -8.1653 0.1543 31 1 0.0572 -5.9336 -0.9512 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306221746.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:27 Heat of formation + Delta-G solvation = -181.583766 kcal Electronic energy + Delta-G solvation = -15785.201320 eV Core-core repulsion = 13065.006523 eV Total energy + Delta-G solvation = -2720.194797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.115 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.85556 -37.43223 -37.06352 -35.99674 -35.00551 -31.86228 -30.71810 -28.16936 -25.44910 -24.07293 -22.59619 -20.76893 -18.85574 -18.52563 -18.11545 -17.86584 -16.93721 -15.98948 -15.65228 -15.50316 -15.15712 -14.82063 -14.62912 -14.27460 -13.91173 -13.40815 -13.13287 -12.88996 -12.49453 -12.23495 -12.12581 -11.95991 -11.60716 -11.06189 -10.83921 -10.63139 -10.53161 -10.39364 -9.16977 -8.65791 -6.35626 1.52721 1.62335 1.80454 2.58777 2.92568 3.15501 3.28485 3.46558 3.52169 3.72128 3.88640 4.06711 4.18956 4.44546 4.46258 4.56126 4.70952 4.76674 4.82540 4.93471 5.18397 5.45211 5.94666 6.19271 6.27107 6.52854 6.59713 6.75873 7.02464 7.06815 7.47562 8.74385 Molecular weight = 217.11amu Principal moments of inertia in cm(-1) A = 0.049786 B = 0.008297 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.269522 B = 3373.998029 C = 3618.602802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.043 4.043 3 Si 1.121 2.879 4 H -0.288 1.288 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.606 4.606 8 H 0.056 0.944 9 C 0.029 3.971 10 C 0.119 3.881 11 H 0.037 0.963 12 N -0.673 5.673 13 C 0.020 3.980 14 C 0.089 3.911 15 H 0.090 0.910 16 O -0.548 6.548 17 C 0.081 3.919 18 H 0.085 0.915 19 O -0.568 6.568 20 C 0.123 3.877 21 H 0.037 0.963 22 O -0.539 6.539 23 H 0.252 0.748 24 H -0.020 1.020 25 H -0.009 1.009 26 H 0.344 0.656 27 H 0.096 0.904 28 H 0.041 0.959 29 H 0.379 0.621 30 H 0.396 0.604 31 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.043 -13.952 -1.000 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.942 3.058 4 H -0.213 1.213 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.644 4.644 8 H 0.074 0.926 9 C -0.008 4.008 10 C 0.009 3.991 11 H 0.055 0.945 12 N -0.307 5.307 13 C -0.109 4.109 14 C 0.029 3.971 15 H 0.107 0.893 16 O -0.353 6.353 17 C 0.022 3.978 18 H 0.102 0.898 19 O -0.377 6.377 20 C 0.062 3.938 21 H 0.055 0.945 22 O -0.343 6.343 23 H 0.061 0.939 24 H -0.002 1.002 25 H 0.009 0.991 26 H 0.164 0.836 27 H 0.114 0.886 28 H 0.059 0.941 29 H 0.227 0.773 30 H 0.247 0.753 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.689 -11.764 -1.014 15.274 hybrid contribution 1.037 -2.063 0.481 2.358 sum 10.726 -13.827 -0.533 17.507 Atomic orbital electron populations 1.70896 1.08211 1.29698 1.48891 1.27489 0.96561 1.07055 0.92872 0.82900 0.74032 0.70864 0.78029 1.21332 1.19184 1.19255 1.22332 0.94420 0.92886 1.54736 0.92577 1.18974 0.94504 0.93592 0.93735 1.21209 0.94415 0.92986 0.90525 0.94534 1.60024 1.27962 1.07548 1.35117 1.22805 0.93234 0.92607 1.02282 1.22475 0.91470 0.95415 0.87698 0.89255 1.86685 1.37149 1.95455 1.16023 1.22627 0.93880 0.85212 0.96108 0.89780 1.86419 1.38638 1.15562 1.97050 1.21771 0.90071 0.92955 0.88961 0.94510 1.86675 1.55706 1.44339 1.47578 0.93861 1.00214 0.99076 0.83621 0.88561 0.94091 0.77317 0.75341 0.78178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.89 13.65 21.45 0.29 -60.59 16 2 C -0.04 -2.54 5.46 84.65 0.46 -2.08 16 3 Si 1.12 50.84 29.90 68.60 2.05 52.90 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.61 -34.86 8.39 25.60 0.21 -34.65 16 8 H 0.06 3.03 7.17 -2.91 -0.02 3.00 16 9 C 0.03 1.63 3.74 29.85 0.11 1.74 16 10 C 0.12 5.14 2.23 44.94 0.10 5.24 16 11 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 12 N -0.67 -26.13 6.27 -491.67 -3.08 -29.21 16 13 C 0.02 0.55 6.21 86.33 0.54 1.08 16 14 C 0.09 2.17 3.48 30.65 0.11 2.27 16 15 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 16 O -0.55 -15.51 11.25 -122.93 -1.38 -16.90 16 17 C 0.08 2.25 3.17 30.67 0.10 2.34 16 18 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 19 O -0.57 -14.12 12.61 -127.83 -1.61 -15.74 16 20 C 0.12 4.71 2.99 30.64 0.09 4.80 16 21 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 22 O -0.54 -22.77 10.78 -122.95 -1.32 -24.09 16 23 H 0.25 16.88 7.22 -92.71 -0.67 16.21 16 24 H -0.02 -1.22 8.01 -2.39 -0.02 -1.24 16 25 H -0.01 -0.58 7.69 -2.39 -0.02 -0.60 16 26 H 0.34 14.14 7.48 -89.70 -0.67 13.47 16 27 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.38 7.92 9.08 -74.06 -0.67 7.25 16 30 H 0.40 5.68 9.08 -74.05 -0.67 5.01 16 31 H 0.37 13.56 8.55 -74.06 -0.63 12.92 16 Total: -1.00 -75.93 254.58 -4.71 -80.64 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -1.37 Total: 32.24 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 1.72 Total: -19.24 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -2.79 Total: -89.80 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -4.32 Total: -56.73 kcal Atomic # 14 Polarization: 50.84 SS G_CDS: 2.05 Total: 52.90 kcal Total: -75.93 -4.71 -80.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306221746.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.943 kcal (2) G-P(sol) polarization free energy of solvation -75.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds