Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99772 * 2 1 4 4 H 1.48502 * 109.46996 * 269.99520 * 3 2 1 5 5 H 1.48497 * 109.47360 * 29.99874 * 3 2 1 6 6 H 1.48499 * 109.47055 * 149.99885 * 3 2 1 7 7 C 1.37872 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00265 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99816 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47281 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.45325 * 55.02197 * 10 9 7 12 12 N 1.46850 * 109.46089 * 295.05647 * 10 9 7 13 13 C 1.46850 * 111.19713 * 178.24134 * 12 10 9 14 14 C 1.53034 * 109.52564 * 61.73898 * 13 12 10 15 15 H 1.09000 * 109.50225 * 180.88431 * 14 13 12 16 16 O 1.42897 * 109.53538 * 60.77957 * 14 13 12 17 17 C 1.53120 * 109.27663 * 300.81923 * 14 13 12 18 18 H 1.08996 * 109.52935 * 297.74895 * 17 14 13 19 19 O 1.42906 * 109.52203 * 177.55732 * 17 14 13 20 20 C 1.53036 * 109.46683 * 175.00104 * 10 9 7 21 21 H 1.08992 * 109.50379 * 59.25237 * 20 10 9 22 22 O 1.42896 * 109.49892 * 299.17562 * 20 10 9 23 23 H 0.97006 * 120.00254 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47324 * 59.99986 * 9 7 2 25 25 H 1.09001 * 109.47701 * 299.99685 * 9 7 2 26 26 H 1.00901 * 110.99843 * 302.33214 * 12 10 9 27 27 H 1.09007 * 109.46080 * 301.72331 * 13 12 10 28 28 H 1.09001 * 109.45527 * 181.75228 * 13 12 10 29 29 H 0.96704 * 113.99827 * 60.18024 * 16 14 13 30 30 H 0.96697 * 113.99902 * 60.31871 * 19 17 14 31 31 H 0.96705 * 114.00235 * 179.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5875 -3.1749 -0.8425 12 7 3.6314 -3.2935 1.2539 13 6 4.0668 -4.6958 1.2765 14 6 5.5933 -4.7588 1.1894 15 1 5.9152 -5.8002 1.1904 16 8 6.1642 -4.0819 2.3109 17 6 6.0542 -4.0826 -0.1047 18 1 5.6510 -4.6225 -0.9615 19 8 7.4820 -4.0881 -0.1641 20 6 5.5468 -2.6381 -0.1252 21 1 5.9810 -2.0880 0.7095 22 8 5.9252 -2.0161 -1.3548 23 1 -0.4851 0.8401 -0.0004 24 1 3.8745 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 3.9895 -2.7909 2.0522 27 1 3.6325 -5.2246 0.4280 28 1 3.7362 -5.1637 2.2038 29 1 5.9143 -4.4577 3.1662 30 1 7.8727 -4.9726 -0.1549 31 1 6.8805 -1.9817 -1.5006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306221747.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = -147.836377 kcal Electronic energy + Delta-G solvation = -15663.681726 eV Core-core repulsion = 12944.950326 eV Total energy + Delta-G solvation = -2718.731400 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84647 -36.51106 -36.11839 -34.72825 -32.70904 -30.62698 -29.25866 -27.25199 -23.52644 -22.60121 -20.62540 -20.06792 -17.74433 -16.97431 -16.87847 -16.48607 -15.42012 -14.84329 -14.71629 -13.98981 -13.78767 -13.59677 -13.22470 -12.89176 -12.39562 -11.86564 -11.55616 -11.29432 -11.16994 -10.88922 -10.52695 -10.28774 -10.05191 -9.86248 -9.55796 -9.35374 -9.02909 -8.38754 -7.87872 -5.87921 -3.82480 3.42116 3.48516 3.53723 3.88742 4.22356 4.39711 4.59322 4.68840 4.89983 4.92814 5.04202 5.31098 5.47085 5.51163 5.58593 5.81340 5.91034 5.99831 6.37386 6.66579 7.24401 7.30233 7.44959 7.53699 7.69186 7.89161 7.93791 8.05023 8.73304 9.23031 9.75077 11.25805 Molecular weight = 217.11amu Principal moments of inertia in cm(-1) A = 0.040402 B = 0.009169 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.861759 B = 3053.041426 C = 3404.088162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.062 3.938 3 Si 0.875 3.125 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.494 4.494 8 H 0.079 0.921 9 C -0.002 4.002 10 C 0.113 3.887 11 H 0.081 0.919 12 N -0.644 5.644 13 C 0.023 3.977 14 C 0.036 3.964 15 H 0.054 0.946 16 O -0.553 6.553 17 C 0.079 3.921 18 H 0.074 0.926 19 O -0.560 6.560 20 C 0.087 3.913 21 H 0.062 0.938 22 O -0.553 6.553 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.029 0.971 26 H 0.344 0.656 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.375 0.625 30 H 0.373 0.627 31 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.340 -10.755 2.576 17.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.138 4.138 3 Si 0.703 3.297 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.533 4.533 8 H 0.097 0.903 9 C -0.039 4.039 10 C 0.002 3.998 11 H 0.100 0.900 12 N -0.273 5.273 13 C -0.108 4.108 14 C -0.026 4.026 15 H 0.072 0.928 16 O -0.358 6.358 17 C 0.020 3.980 18 H 0.092 0.908 19 O -0.365 6.365 20 C 0.025 3.975 21 H 0.080 0.920 22 O -0.356 6.356 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.047 0.953 26 H 0.163 0.837 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.221 0.779 30 H 0.220 0.780 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 12.047 -9.687 1.802 15.563 hybrid contribution 1.842 -0.206 0.713 1.986 sum 13.889 -9.893 2.515 17.236 Atomic orbital electron populations 1.69915 1.06153 1.26437 1.52344 1.24993 0.94692 0.98818 0.95263 0.86854 0.80277 0.84148 0.78388 1.20467 1.21677 1.19263 1.21045 0.88861 0.94518 1.48844 0.90304 1.19576 0.97739 0.89763 0.96838 1.21579 0.86823 0.99375 0.91980 0.90040 1.60718 1.61318 1.00525 1.04763 1.22792 0.91306 0.93410 1.03328 1.23431 0.96050 0.95169 0.87954 0.92776 1.86608 1.73822 1.59384 1.16029 1.22834 0.81184 0.99726 0.94254 0.90837 1.86494 1.19512 1.33468 1.97024 1.22901 0.98608 0.88604 0.87377 0.91993 1.86558 1.27850 1.81483 1.39708 0.93053 0.96879 0.95303 0.83731 0.90004 0.90277 0.77861 0.77992 0.78125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.77 13.96 55.43 0.77 -28.00 16 2 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 22.66 27.47 -169.99 -4.67 17.99 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 7 C -0.49 -14.39 9.39 -34.44 -0.32 -14.72 16 8 H 0.08 2.48 7.99 -52.48 -0.42 2.06 16 9 C 0.00 -0.04 3.60 -27.88 -0.10 -0.14 16 10 C 0.11 2.30 2.10 -67.72 -0.14 2.16 16 11 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 12 N -0.64 -11.71 6.21 -106.75 -0.66 -12.37 16 13 C 0.02 0.30 6.25 -3.83 -0.02 0.28 16 14 C 0.04 0.43 3.48 -26.65 -0.09 0.34 16 15 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 16 O -0.55 -6.97 12.12 -46.52 -0.56 -7.54 16 17 C 0.08 1.11 2.99 -26.61 -0.08 1.04 16 18 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 19 O -0.56 -7.30 12.77 -55.35 -0.71 -8.01 16 20 C 0.09 1.54 2.59 -26.65 -0.07 1.48 16 21 H 0.06 1.19 7.80 -51.93 -0.40 0.79 16 22 O -0.55 -10.07 12.60 -42.31 -0.53 -10.61 16 23 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 24 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 25 H 0.03 0.75 6.99 -51.93 -0.36 0.38 16 26 H 0.34 6.17 8.32 -39.29 -0.33 5.84 16 27 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.37 3.11 9.08 45.56 0.41 3.52 16 30 H 0.37 3.17 9.09 45.56 0.41 3.59 16 31 H 0.37 5.40 8.70 45.56 0.40 5.79 16 LS Contribution 255.93 15.07 3.86 3.86 Total: -1.00 -34.79 255.93 -5.38 -40.17 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -1.94 Total: 12.31 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -0.93 Total: -7.81 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.11 Total: -40.37 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -1.80 Total: -26.15 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.67 Total: 17.99 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.79 -5.38 -40.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306221747.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.666 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds