Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99772 * 2 1 4 4 H 1.48502 * 109.46996 * 269.99520 * 3 2 1 5 5 H 1.48497 * 109.47360 * 29.99874 * 3 2 1 6 6 H 1.48499 * 109.47055 * 149.99885 * 3 2 1 7 7 C 1.37872 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00265 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99816 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47281 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.45325 * 55.02197 * 10 9 7 12 12 N 1.46850 * 109.46089 * 295.05647 * 10 9 7 13 13 C 1.46850 * 111.19713 * 178.24134 * 12 10 9 14 14 C 1.53034 * 109.52564 * 61.73898 * 13 12 10 15 15 H 1.09000 * 109.50225 * 180.88431 * 14 13 12 16 16 O 1.42897 * 109.53538 * 60.77957 * 14 13 12 17 17 C 1.53120 * 109.27663 * 300.81923 * 14 13 12 18 18 H 1.08996 * 109.52935 * 297.74895 * 17 14 13 19 19 O 1.42906 * 109.52203 * 177.55732 * 17 14 13 20 20 C 1.53036 * 109.46683 * 175.00104 * 10 9 7 21 21 H 1.08992 * 109.50379 * 59.25237 * 20 10 9 22 22 O 1.42896 * 109.49892 * 299.17562 * 20 10 9 23 23 H 0.97006 * 120.00254 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47324 * 59.99986 * 9 7 2 25 25 H 1.09001 * 109.47701 * 299.99685 * 9 7 2 26 26 H 1.00901 * 110.99843 * 302.33214 * 12 10 9 27 27 H 1.09007 * 109.46080 * 301.72331 * 13 12 10 28 28 H 1.09001 * 109.45527 * 181.75228 * 13 12 10 29 29 H 0.96704 * 113.99827 * 60.18024 * 16 14 13 30 30 H 0.96697 * 113.99902 * 60.31871 * 19 17 14 31 31 H 0.96705 * 114.00235 * 179.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5875 -3.1749 -0.8425 12 7 3.6314 -3.2935 1.2539 13 6 4.0668 -4.6958 1.2765 14 6 5.5933 -4.7588 1.1894 15 1 5.9152 -5.8002 1.1904 16 8 6.1642 -4.0819 2.3109 17 6 6.0542 -4.0826 -0.1047 18 1 5.6510 -4.6225 -0.9615 19 8 7.4820 -4.0881 -0.1641 20 6 5.5468 -2.6381 -0.1252 21 1 5.9810 -2.0880 0.7095 22 8 5.9252 -2.0161 -1.3548 23 1 -0.4851 0.8401 -0.0004 24 1 3.8745 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 3.9895 -2.7909 2.0522 27 1 3.6325 -5.2246 0.4280 28 1 3.7362 -5.1637 2.2038 29 1 5.9143 -4.4577 3.1662 30 1 7.8727 -4.9726 -0.1549 31 1 6.8805 -1.9817 -1.5006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306221747.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = -182.298938 kcal Electronic energy + Delta-G solvation = -15665.176135 eV Core-core repulsion = 12944.950326 eV Total energy + Delta-G solvation = -2720.225809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04024 -37.68680 -37.29348 -36.00945 -34.77769 -32.34407 -30.46217 -28.93285 -25.19156 -23.89678 -22.14050 -21.49000 -18.98074 -18.67724 -18.12000 -17.96315 -16.55783 -16.49626 -15.87245 -15.60141 -15.32543 -14.82854 -14.68886 -14.41199 -14.07796 -13.34885 -13.27797 -12.82305 -12.55325 -12.43755 -12.05719 -11.76105 -11.71181 -11.44857 -11.25037 -11.00492 -10.72980 -10.63414 -9.19632 -8.20255 -6.19663 1.36821 1.37038 1.49358 2.40604 2.93084 3.06943 3.15610 3.26945 3.64506 3.71648 3.81133 4.00403 4.04648 4.34136 4.48213 4.61770 4.72665 4.83560 4.89077 4.94900 5.24196 5.46064 5.70979 6.16640 6.43632 6.52797 6.71353 6.81345 6.85370 6.88563 7.41423 8.96631 Molecular weight = 217.11amu Principal moments of inertia in cm(-1) A = 0.040402 B = 0.009169 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.861759 B = 3053.041426 C = 3404.088162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.495 4.495 8 H 0.041 0.959 9 C 0.003 3.997 10 C 0.120 3.880 11 H 0.063 0.937 12 N -0.666 5.666 13 C 0.021 3.979 14 C 0.047 3.953 15 H 0.095 0.905 16 O -0.572 6.572 17 C 0.086 3.914 18 H 0.081 0.919 19 O -0.570 6.570 20 C 0.091 3.909 21 H 0.047 0.953 22 O -0.572 6.572 23 H 0.263 0.737 24 H 0.011 0.989 25 H 0.018 0.982 26 H 0.343 0.657 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.393 0.607 30 H 0.396 0.604 31 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.430 -11.545 3.125 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.533 4.533 8 H 0.060 0.940 9 C -0.034 4.034 10 C 0.009 3.991 11 H 0.082 0.918 12 N -0.297 5.297 13 C -0.109 4.109 14 C -0.014 4.014 15 H 0.112 0.888 16 O -0.380 6.380 17 C 0.026 3.974 18 H 0.099 0.901 19 O -0.378 6.378 20 C 0.030 3.970 21 H 0.065 0.935 22 O -0.378 6.378 23 H 0.072 0.928 24 H 0.030 0.970 25 H 0.037 0.963 26 H 0.162 0.838 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.243 0.757 30 H 0.246 0.754 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 14.172 -10.520 2.365 17.807 hybrid contribution 1.173 -0.051 0.550 1.297 sum 15.345 -10.571 2.915 18.861 Atomic orbital electron populations 1.70061 1.07944 1.27601 1.53938 1.25887 0.95551 1.02890 0.95112 0.85764 0.79281 0.79339 0.78802 1.19758 1.20908 1.17941 1.21256 0.91103 0.93085 1.47900 0.94037 1.19442 0.94811 0.93167 0.96003 1.21211 0.88792 0.96368 0.92681 0.91828 1.60598 1.62587 1.02884 1.03584 1.22926 0.92870 0.90367 1.04718 1.23290 0.94350 0.96788 0.86943 0.88772 1.86567 1.73892 1.60307 1.17225 1.22583 0.81983 0.96896 0.95922 0.90149 1.86434 1.18629 1.35642 1.97085 1.22622 0.96521 0.91273 0.86623 0.93525 1.86510 1.29470 1.81970 1.39871 0.92843 0.97039 0.96331 0.83794 0.90026 0.87731 0.75671 0.75387 0.76343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 2 C 0.00 0.07 5.47 84.65 0.46 0.53 16 3 Si 0.94 47.10 27.47 68.60 1.88 48.98 16 4 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 7 C -0.50 -29.59 9.39 25.60 0.24 -29.35 16 8 H 0.04 2.72 7.99 -2.91 -0.02 2.70 16 9 C 0.00 0.17 3.60 29.85 0.11 0.28 16 10 C 0.12 4.91 2.10 44.94 0.09 5.01 16 11 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 12 N -0.67 -23.90 6.21 -491.66 -3.05 -26.95 16 13 C 0.02 0.52 6.25 86.32 0.54 1.06 16 14 C 0.05 0.97 3.48 30.65 0.11 1.08 16 15 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 16 O -0.57 -12.56 12.12 -138.18 -1.67 -14.23 16 17 C 0.09 2.18 2.99 30.67 0.09 2.27 16 18 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 19 O -0.57 -12.98 12.77 -129.75 -1.66 -14.63 16 20 C 0.09 3.14 2.59 30.65 0.08 3.22 16 21 H 0.05 1.75 7.80 -2.39 -0.02 1.73 16 22 O -0.57 -20.32 12.60 -142.22 -1.79 -22.11 16 23 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 24 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 25 H 0.02 0.96 6.99 -2.39 -0.02 0.94 16 26 H 0.34 12.10 8.32 -89.69 -0.75 11.35 16 27 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.39 5.15 9.08 -74.05 -0.67 4.48 16 30 H 0.40 5.11 9.09 -74.06 -0.67 4.44 16 31 H 0.39 10.69 8.70 -74.05 -0.64 10.04 16 Total: -1.00 -76.10 255.93 -5.88 -81.98 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -1.61 Total: 24.35 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 1.72 Total: -15.91 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -2.75 Total: -88.44 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -5.12 Total: -50.97 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.88 Total: 48.98 kcal Total: -76.10 -5.88 -81.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306221747.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.315 kcal (2) G-P(sol) polarization free energy of solvation -76.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds