Wall clock time and date at job start Mon Mar 30 2020 02:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48494 * 109.47018 * 269.99678 * 3 2 1 5 5 H 1.48502 * 109.47289 * 29.99823 * 3 2 1 6 6 H 1.48500 * 109.46912 * 149.99765 * 3 2 1 7 7 C 1.38807 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99963 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00349 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99744 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46558 * 179.97438 * 10 9 7 12 12 C 1.34955 * 119.69422 * 95.02077 * 11 10 9 13 13 C 1.40474 * 120.29856 * 179.97438 * 12 11 10 14 14 C 1.36020 * 119.69448 * 0.02562 * 13 12 11 15 15 C 1.40937 * 119.32710 * 359.95805 * 14 13 12 16 16 N 1.32551 * 132.32882 * 180.02562 * 15 14 13 17 17 C 1.33517 * 109.16458 * 180.02562 * 16 15 14 18 18 C 1.35106 * 108.62101 * 0.24006 * 17 16 15 19 19 N 1.36480 * 119.69175 * 274.99682 * 11 10 9 20 20 H 0.97004 * 119.99971 * 0.02562 * 1 2 3 21 21 H 0.96997 * 119.99894 * 359.97438 * 9 7 2 22 22 H 1.08996 * 109.47575 * 60.00064 * 10 9 7 23 23 H 1.08998 * 109.47037 * 299.99574 * 10 9 7 24 24 H 1.08002 * 119.84887 * 359.97438 * 12 11 10 25 25 H 1.08000 * 120.15214 * 179.97438 * 13 12 11 26 26 H 1.07994 * 120.33801 * 180.02562 * 14 13 12 27 27 H 1.08002 * 125.68639 * 179.97438 * 17 16 15 28 28 H 1.08003 * 126.40415 * 179.75682 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.5938 -2.1954 0.0011 12 6 6.2698 -2.1741 1.1689 13 6 7.6511 -1.9191 1.1836 14 6 8.3070 -1.6926 0.0137 15 6 7.5870 -1.7186 -1.1976 16 7 7.9543 -1.5382 -2.4583 17 6 6.8858 -1.6658 -3.2487 18 6 5.8079 -1.9288 -2.4778 19 7 6.2395 -1.9703 -1.1800 20 1 -0.4850 0.8401 -0.0004 21 1 3.8646 -0.3621 0.0007 22 1 3.8491 -3.0422 -0.8891 23 1 3.8484 -3.0426 0.8908 24 1 5.7464 -2.3538 2.0963 25 1 8.1897 -1.9022 2.1196 26 1 9.3689 -1.4960 0.0129 27 1 6.8829 -1.5701 -4.3245 28 1 4.7955 -2.0806 -2.8219 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306329694.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:28 Heat of formation + Delta-G solvation = 105.819831 kcal Electronic energy + Delta-G solvation = -13932.872073 eV Core-core repulsion = 11564.741702 eV Total energy + Delta-G solvation = -2368.130371 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.60474 -37.56516 -35.15858 -33.31694 -31.52952 -30.04079 -28.70056 -26.27484 -23.14542 -22.52945 -22.14906 -20.58778 -18.04768 -17.53308 -16.35881 -15.76162 -15.57723 -14.64527 -14.33584 -13.88331 -13.53499 -13.23651 -12.87238 -12.59443 -12.23684 -11.94914 -11.39803 -11.09396 -10.97333 -10.82135 -10.30265 -9.95845 -9.73976 -9.09762 -8.66160 -7.63428 -7.45932 -5.91470 -3.30620 0.87574 1.46306 2.79928 3.06558 3.29026 3.33218 3.37621 3.66531 4.37415 4.46800 4.61135 4.88886 4.96798 5.15205 5.37975 5.41916 5.59497 5.62402 5.72136 5.90056 6.10108 6.15163 6.25537 6.28069 6.69632 6.80237 7.28010 7.78446 8.02797 8.25574 9.01026 9.73719 9.90836 11.25886 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034403 B = 0.008905 C = 0.008364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.675356 B = 3143.628152 C = 3346.829629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.015 3.985 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.094 0.906 9 N -0.748 5.748 10 C 0.193 3.807 11 C 0.095 3.905 12 C -0.142 4.142 13 C -0.096 4.096 14 C -0.093 4.093 15 C 0.215 3.785 16 N -0.502 5.502 17 C 0.020 3.980 18 C -0.080 4.080 19 N -0.352 5.352 20 H 0.262 0.738 21 H 0.364 0.636 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.152 0.848 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.179 0.821 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.237 -4.516 0.399 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.182 4.182 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.112 0.888 9 N -0.395 5.395 10 C 0.066 3.934 11 C -0.010 4.010 12 C -0.163 4.163 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.028 4.028 16 N -0.222 5.222 17 C -0.131 4.131 18 C -0.212 4.212 19 N -0.024 5.024 20 H 0.072 0.928 21 H 0.197 0.803 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.169 0.831 25 H 0.158 0.842 26 H 0.164 0.836 27 H 0.196 0.804 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 14.696 -4.437 0.075 15.351 hybrid contribution -0.377 1.123 0.187 1.199 sum 14.319 -3.315 0.261 14.700 Atomic orbital electron populations 1.69686 1.05063 1.26142 1.56454 1.24627 0.95174 0.97174 1.01265 0.86607 0.79227 0.85014 0.78041 1.20853 1.21329 1.20426 1.18986 0.79866 0.94992 1.44571 0.88839 1.42663 1.04127 1.01280 1.91432 1.19751 0.81842 0.90702 1.01100 1.20853 0.96354 1.00022 0.83740 1.20710 0.94528 1.04108 0.96979 1.21045 0.94088 0.98663 0.98179 1.20175 1.00311 1.02813 0.88052 1.20998 0.81421 1.05509 0.94867 1.70695 1.29611 1.23554 0.98336 1.22447 0.87889 1.02835 0.99902 1.22819 1.02178 1.15152 0.81054 1.42818 1.09694 1.43530 1.06332 0.92758 0.80326 0.93908 0.92331 0.83083 0.84172 0.83598 0.80439 0.79896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.97 55.49 0.78 -27.61 15 2 C 0.01 0.42 5.50 -17.44 -0.10 0.32 15 3 Si 0.88 21.97 27.74 -169.99 -4.71 17.26 15 4 H -0.28 -7.06 7.11 56.52 0.40 -6.65 15 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 15 6 H -0.28 -6.66 6.52 56.52 0.37 -6.29 15 7 C -0.26 -6.96 10.47 -15.06 -0.16 -7.12 15 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 15 9 N -0.75 -17.23 5.40 -61.08 -0.33 -17.56 15 10 C 0.19 3.56 6.18 -5.19 -0.03 3.53 15 11 C 0.09 1.56 6.15 -81.69 -0.50 1.06 15 12 C -0.14 -1.95 9.58 -39.91 -0.38 -2.33 15 13 C -0.10 -1.14 10.07 -39.54 -0.40 -1.53 15 14 C -0.09 -1.25 10.11 -39.36 -0.40 -1.65 15 15 C 0.22 3.61 7.81 -156.04 -1.22 2.39 15 16 N -0.50 -8.71 11.32 -12.78 -0.14 -8.85 15 17 C 0.02 0.31 11.83 -17.93 -0.21 0.10 15 18 C -0.08 -1.31 11.12 -16.43 -0.18 -1.50 15 19 N -0.35 -6.02 2.94 -58.45 -0.17 -6.19 15 20 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 21 H 0.36 8.54 5.52 -40.82 -0.23 8.31 15 22 H 0.04 0.79 7.74 -51.93 -0.40 0.39 15 23 H 0.06 1.02 8.01 -51.93 -0.42 0.60 15 24 H 0.15 1.78 8.03 -52.49 -0.42 1.36 15 25 H 0.14 1.15 8.06 -52.49 -0.42 0.73 15 26 H 0.15 1.57 8.06 -52.49 -0.42 1.15 15 27 H 0.18 2.12 8.06 -52.49 -0.42 1.69 15 28 H 0.18 2.79 7.94 -52.48 -0.42 2.38 15 LS Contribution 248.69 15.07 3.75 3.75 Total: -1.00 -32.32 248.69 -7.16 -39.48 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -2.74 Total: 6.46 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.58 Total: -6.73 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.13 Total: -60.21 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.32 -7.16 -39.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306329694.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.297 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds