Wall clock time and date at job start Mon Mar 30 2020 02:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99882 * 2 1 4 4 H 1.48494 * 109.47018 * 269.99678 * 3 2 1 5 5 H 1.48502 * 109.47289 * 29.99823 * 3 2 1 6 6 H 1.48500 * 109.46912 * 149.99765 * 3 2 1 7 7 C 1.38807 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99963 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00349 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99744 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46558 * 179.97438 * 10 9 7 12 12 C 1.34955 * 119.69422 * 95.02077 * 11 10 9 13 13 C 1.40474 * 120.29856 * 179.97438 * 12 11 10 14 14 C 1.36020 * 119.69448 * 0.02562 * 13 12 11 15 15 C 1.40937 * 119.32710 * 359.95805 * 14 13 12 16 16 N 1.32551 * 132.32882 * 180.02562 * 15 14 13 17 17 C 1.33517 * 109.16458 * 180.02562 * 16 15 14 18 18 C 1.35106 * 108.62101 * 0.24006 * 17 16 15 19 19 N 1.36480 * 119.69175 * 274.99682 * 11 10 9 20 20 H 0.97004 * 119.99971 * 0.02562 * 1 2 3 21 21 H 0.96997 * 119.99894 * 359.97438 * 9 7 2 22 22 H 1.08996 * 109.47575 * 60.00064 * 10 9 7 23 23 H 1.08998 * 109.47037 * 299.99574 * 10 9 7 24 24 H 1.08002 * 119.84887 * 359.97438 * 12 11 10 25 25 H 1.08000 * 120.15214 * 179.97438 * 13 12 11 26 26 H 1.07994 * 120.33801 * 180.02562 * 14 13 12 27 27 H 1.08002 * 125.68639 * 179.97438 * 17 16 15 28 28 H 1.08003 * 126.40415 * 179.75682 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.5938 -2.1954 0.0011 12 6 6.2698 -2.1741 1.1689 13 6 7.6511 -1.9191 1.1836 14 6 8.3070 -1.6926 0.0137 15 6 7.5870 -1.7186 -1.1976 16 7 7.9543 -1.5382 -2.4583 17 6 6.8858 -1.6658 -3.2487 18 6 5.8079 -1.9288 -2.4778 19 7 6.2395 -1.9703 -1.1800 20 1 -0.4850 0.8401 -0.0004 21 1 3.8646 -0.3621 0.0007 22 1 3.8491 -3.0422 -0.8891 23 1 3.8484 -3.0426 0.8908 24 1 5.7464 -2.3538 2.0963 25 1 8.1897 -1.9022 2.1196 26 1 9.3689 -1.4960 0.0129 27 1 6.8829 -1.5701 -4.3245 28 1 4.7955 -2.0806 -2.8219 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306329694.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:27 Heat of formation + Delta-G solvation = 85.045586 kcal Electronic energy + Delta-G solvation = -13933.772912 eV Core-core repulsion = 11564.741702 eV Total energy + Delta-G solvation = -2369.031210 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.77236 -38.76984 -36.76167 -34.73336 -33.38405 -31.37986 -29.92793 -27.79336 -24.71796 -23.77268 -23.53112 -21.90568 -19.97329 -18.74824 -17.51749 -17.12199 -16.64744 -16.50713 -15.92807 -15.14812 -14.97987 -14.71943 -14.27090 -14.23811 -13.71036 -13.22633 -12.97144 -12.64661 -12.41970 -12.19469 -11.95319 -11.89536 -11.21845 -11.10865 -9.82213 -9.46008 -8.79864 -8.10682 -5.46615 -0.23155 0.34748 1.31335 1.33637 1.39985 1.64238 1.88368 2.39512 2.54086 3.21398 3.25293 3.42987 3.65323 3.76987 3.95331 4.16248 4.43077 4.47896 4.68172 4.68593 4.72115 4.97953 5.17465 5.22676 5.59186 5.65059 5.68041 6.10833 6.11497 6.83962 6.94816 7.67399 7.85955 9.10010 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034403 B = 0.008905 C = 0.008364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.675356 B = 3143.628152 C = 3346.829629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.049 4.049 3 Si 0.946 3.054 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.237 4.237 8 H 0.068 0.932 9 N -0.751 5.751 10 C 0.196 3.804 11 C 0.059 3.941 12 C -0.123 4.123 13 C -0.081 4.081 14 C -0.098 4.098 15 C 0.197 3.803 16 N -0.529 5.529 17 C 0.021 3.979 18 C -0.107 4.107 19 N -0.359 5.359 20 H 0.260 0.740 21 H 0.363 0.637 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.174 0.826 25 H 0.187 0.813 26 H 0.173 0.827 27 H 0.205 0.795 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.766 -4.232 1.689 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.241 4.241 3 Si 0.774 3.226 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.368 4.368 8 H 0.085 0.915 9 N -0.397 5.397 10 C 0.070 3.930 11 C -0.045 4.045 12 C -0.144 4.144 13 C -0.105 4.105 14 C -0.118 4.118 15 C -0.046 4.046 16 N -0.250 5.250 17 C -0.130 4.130 18 C -0.239 4.239 19 N -0.031 5.031 20 H 0.070 0.930 21 H 0.196 0.804 22 H 0.055 0.945 23 H 0.092 0.908 24 H 0.191 0.809 25 H 0.205 0.795 26 H 0.190 0.810 27 H 0.222 0.778 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 17.268 -4.186 1.371 17.821 hybrid contribution -1.099 0.901 -0.174 1.432 sum 16.169 -3.285 1.197 16.543 Atomic orbital electron populations 1.69840 1.06860 1.26833 1.58959 1.25339 0.95906 1.00669 1.02229 0.85560 0.78560 0.80641 0.77872 1.21044 1.21573 1.18475 1.18982 0.81838 0.93856 1.42101 0.91452 1.42648 1.02681 1.03099 1.91262 1.19766 0.83327 0.88657 1.01281 1.20702 0.95316 1.03764 0.84680 1.21192 0.95641 1.00933 0.96664 1.21524 0.93123 0.96322 0.99507 1.20674 1.01637 1.02212 0.87270 1.21665 0.81604 1.05521 0.95833 1.70694 1.30333 1.24948 0.99054 1.22920 0.87233 1.01720 1.01126 1.22980 1.02574 1.16792 0.81519 1.42908 1.10024 1.43637 1.06490 0.93048 0.80412 0.94466 0.90848 0.80857 0.79544 0.80965 0.77785 0.80034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.96 13.97 21.65 0.30 -60.66 15 2 C -0.05 -2.81 5.50 84.86 0.47 -2.34 15 3 Si 0.95 45.35 27.74 68.60 1.90 47.25 15 4 H -0.28 -13.59 7.11 99.48 0.71 -12.89 15 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 15 6 H -0.26 -11.51 6.52 99.48 0.65 -10.86 15 7 C -0.24 -13.04 10.47 84.03 0.88 -12.16 15 8 H 0.07 3.99 8.06 -2.91 -0.02 3.97 15 9 N -0.75 -33.92 5.40 -347.16 -1.87 -35.79 15 10 C 0.20 7.02 6.18 85.64 0.53 7.55 15 11 C 0.06 1.84 6.15 41.08 0.25 2.09 15 12 C -0.12 -2.91 9.58 22.06 0.21 -2.70 15 13 C -0.08 -1.53 10.07 22.30 0.22 -1.31 15 14 C -0.10 -2.27 10.11 22.42 0.23 -2.04 15 15 C 0.20 6.22 7.81 134.11 1.05 7.27 15 16 N -0.53 -17.76 11.32 -194.34 -2.20 -19.96 15 17 C 0.02 0.63 11.83 83.72 0.99 1.62 15 18 C -0.11 -3.49 11.12 83.19 0.93 -2.56 15 19 N -0.36 -11.85 2.94 -338.84 -1.00 -12.84 15 20 H 0.26 15.53 8.31 -92.71 -0.77 14.76 15 21 H 0.36 16.45 5.52 -92.71 -0.51 15.93 15 22 H 0.04 1.38 7.74 -2.39 -0.02 1.36 15 23 H 0.07 2.43 8.01 -2.39 -0.02 2.41 15 24 H 0.17 3.28 8.03 -2.91 -0.02 3.26 15 25 H 0.19 1.80 8.06 -2.91 -0.02 1.78 15 26 H 0.17 2.98 8.06 -2.91 -0.02 2.96 15 27 H 0.21 4.66 8.06 -2.91 -0.02 4.64 15 28 H 0.18 5.70 7.94 -2.91 -0.02 5.68 15 Total: -1.00 -70.25 248.69 3.49 -66.76 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.60 Total: 19.82 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 5.75 Total: -4.58 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -4.77 Total: -129.25 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -70.25 3.49 -66.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306329694.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.808 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds