Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46686 * 125.29817 * 179.72093 * 9 7 2 11 11 C 1.53651 * 106.93943 * 197.66098 * 10 9 7 12 12 H 1.08999 * 112.60455 * 211.35660 * 11 10 9 13 13 C 1.54588 * 109.52904 * 85.24077 * 11 10 9 14 14 C 1.54903 * 102.69295 * 210.58956 * 13 11 10 15 15 C 1.54205 * 104.23247 * 38.21605 * 14 13 11 16 16 F 1.39891 * 109.99745 * 96.11597 * 15 14 13 17 17 F 1.39901 * 109.99332 * 217.45236 * 15 14 13 18 18 C 1.55100 * 106.91293 * 336.27194 * 15 14 13 19 19 H 1.09004 * 112.72358 * 237.22374 * 18 15 14 20 20 C 1.46542 * 125.30491 * 359.41935 * 9 7 2 21 21 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.97019 * 317.03323 * 10 9 7 23 23 H 1.09002 * 109.96651 * 78.25891 * 10 9 7 24 24 H 1.08998 * 110.76392 * 328.89417 * 13 11 10 25 25 H 1.09007 * 110.76007 * 92.10282 * 13 11 10 26 26 H 1.09005 * 110.47732 * 156.90086 * 14 13 11 27 27 H 1.08996 * 110.48355 * 279.52582 * 14 13 11 28 28 H 1.08995 * 109.72937 * 298.08059 * 20 9 7 29 29 H 1.09004 * 109.72916 * 58.68028 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 1.9384 -3.7207 -0.0138 11 6 0.8530 -4.7102 -0.4649 12 1 0.9729 -5.6966 -0.0168 13 6 0.8092 -4.7606 -2.0094 14 6 -0.6796 -5.0765 -2.2976 15 6 -1.4516 -4.2634 -1.2388 16 9 -1.8687 -3.0439 -1.7828 17 9 -2.5588 -4.9914 -0.7903 18 6 -0.4771 -4.0218 -0.0566 19 1 -0.8619 -4.4003 0.8904 20 6 -0.1337 -2.5234 -0.0011 21 1 -0.4850 0.8401 0.0004 22 1 2.7749 -3.7420 -0.7122 23 1 2.2834 -3.9770 0.9879 24 1 1.0895 -3.7973 -2.4355 25 1 1.4557 -5.5521 -2.3886 26 1 -0.9513 -4.7503 -3.3016 27 1 -0.8739 -6.1421 -2.1762 28 1 -0.5405 -2.0837 0.9095 29 1 -0.5534 -2.0194 -0.8717 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306401032.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -97.957598 kcal Electronic energy + Delta-G solvation = -15595.359374 eV Core-core repulsion = 12767.703364 eV Total energy + Delta-G solvation = -2827.656010 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.89211 -47.97242 -40.11084 -35.96100 -33.34523 -30.95076 -29.91726 -26.53245 -26.20932 -22.43223 -21.72226 -20.71843 -18.92217 -18.53877 -17.80902 -17.07006 -16.55470 -15.92963 -15.21163 -15.16956 -14.65657 -14.57712 -14.37417 -13.91648 -13.46199 -13.34011 -12.99664 -12.70050 -12.64131 -12.29687 -12.10870 -11.88096 -11.80445 -11.51639 -11.42273 -11.38040 -10.67929 -8.86454 -7.84311 -5.20694 1.45210 1.47734 1.56430 2.49334 2.81723 3.04888 3.19508 3.35167 3.48420 3.80670 4.03080 4.18658 4.24785 4.31584 4.52009 4.55150 4.64944 4.88948 4.94641 4.99758 5.15531 5.21899 5.45312 5.49845 5.54883 5.80640 6.22663 7.09993 7.79944 8.41652 9.25452 Molecular weight = 217.10amu Principal moments of inertia in cm(-1) A = 0.043244 B = 0.010477 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.340372 B = 2671.990006 C = 2998.528775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.087 0.913 9 N -0.622 5.622 10 C 0.133 3.867 11 C -0.085 4.085 12 H 0.132 0.868 13 C -0.106 4.106 14 C -0.143 4.143 15 C 0.274 3.726 16 F -0.211 7.211 17 F -0.209 7.209 18 C -0.152 4.152 19 H 0.106 0.894 20 C 0.178 3.822 21 H 0.245 0.755 22 H 0.050 0.950 23 H 0.021 0.979 24 H 0.049 0.951 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.129 0.871 28 H -0.005 1.005 29 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -12.597 -3.685 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.372 4.372 8 H 0.105 0.895 9 N -0.349 5.349 10 C 0.008 3.992 11 C -0.103 4.103 12 H 0.150 0.850 13 C -0.143 4.143 14 C -0.181 4.181 15 C 0.238 3.762 16 F -0.192 7.192 17 F -0.190 7.190 18 C -0.172 4.172 19 H 0.124 0.876 20 C 0.053 3.947 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.068 0.932 25 H 0.136 0.864 26 H 0.113 0.887 27 H 0.147 0.853 28 H 0.013 0.987 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.668 -12.376 -3.685 12.931 hybrid contribution -0.242 1.591 0.322 1.641 sum 0.426 -10.785 -3.363 11.305 Atomic orbital electron populations 1.70224 1.06452 1.25168 1.58226 1.25727 0.96578 1.01312 1.02626 0.85045 0.77646 0.78936 0.77501 1.21198 1.22364 1.19050 1.19488 0.91126 0.83602 1.43003 0.89483 1.44431 1.01821 1.01540 1.87098 1.21416 0.95467 0.84263 0.98060 1.22814 0.91402 0.99217 0.96894 0.84989 1.22445 0.94984 1.02694 0.94192 1.23325 0.95443 1.01876 0.97431 1.22506 0.82050 0.77102 0.94551 1.92923 1.91454 1.47708 1.87075 1.92945 1.57844 1.77536 1.90672 1.23963 0.96683 0.99141 0.97448 0.87556 1.20936 0.84765 0.89621 0.99398 0.94561 0.93218 0.96086 0.93198 0.86397 0.88679 0.85323 0.98655 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.61 10.24 21.65 0.22 -59.38 15 2 C -0.07 -4.07 5.48 84.86 0.47 -3.60 15 3 Si 0.98 46.70 29.55 68.60 2.03 48.73 15 4 H -0.29 -13.30 7.11 99.48 0.71 -12.60 15 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 7 C -0.24 -13.82 10.25 84.04 0.86 -12.96 15 8 H 0.09 4.66 7.83 -2.91 -0.02 4.63 15 9 N -0.62 -32.36 3.37 -698.56 -2.36 -34.72 15 10 C 0.13 5.18 6.51 86.56 0.56 5.74 15 11 C -0.08 -2.56 3.84 -9.27 -0.04 -2.59 15 12 H 0.13 2.89 8.14 -2.39 -0.02 2.87 15 13 C -0.11 -2.82 6.16 31.79 0.20 -2.63 15 14 C -0.14 -3.63 6.39 31.65 0.20 -3.42 15 15 C 0.27 9.67 2.51 31.72 0.08 9.75 15 16 F -0.21 -9.28 14.65 44.97 0.66 -8.62 15 17 F -0.21 -7.10 17.08 44.97 0.77 -6.34 15 18 C -0.15 -5.77 3.79 -9.03 -0.03 -5.81 15 19 H 0.11 3.77 8.11 -2.39 -0.02 3.75 15 20 C 0.18 9.21 4.78 86.65 0.41 9.62 15 21 H 0.25 15.00 8.31 -92.70 -0.77 14.23 15 22 H 0.05 1.83 7.93 -2.39 -0.02 1.81 15 23 H 0.02 0.81 8.14 -2.39 -0.02 0.79 15 24 H 0.05 1.71 7.94 -2.39 -0.02 1.69 15 25 H 0.12 2.17 8.14 -2.38 -0.02 2.15 15 26 H 0.09 2.30 8.11 -2.38 -0.02 2.28 15 27 H 0.13 2.34 8.11 -2.39 -0.02 2.33 15 28 H 0.00 -0.29 7.52 -2.39 -0.02 -0.30 15 29 H 0.05 2.76 4.96 -2.38 -0.01 2.75 15 Total: -1.00 -69.78 239.17 5.17 -64.61 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.14 Total: 1.62 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: 2.71 Total: -5.91 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -2.14 Total: -94.10 kcal Atomic # 9 Polarization: -16.38 SS G_CDS: 1.43 Total: -14.96 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -69.78 5.17 -64.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306401032.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.350 kcal (2) G-P(sol) polarization free energy of solvation -69.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds