Wall clock time and date at job start Mon Mar 30 2020 02:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.41268 * 126.40159 * 144.79791 * 3 2 1 5 5 N 1.30487 * 108.05118 * 179.97438 * 4 3 2 6 6 N 1.39943 * 108.89153 * 359.97438 * 5 4 3 7 7 C 1.46491 * 125.77161 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.47256 * 303.25332 * 7 6 5 9 9 C 1.50696 * 115.55106 * 279.11254 * 8 7 6 10 10 H 1.08000 * 120.00041 * 144.78600 * 9 8 7 11 11 C 1.37876 * 120.00090 * 324.78896 * 9 8 7 12 12 N 1.31518 * 120.00037 * 340.95253 * 11 9 8 13 13 Si 1.86802 * 119.99869 * 160.94721 * 11 9 8 14 14 H 1.48498 * 109.47073 * 90.00351 * 13 11 9 15 15 H 1.48504 * 109.47036 * 210.00060 * 13 11 9 16 16 H 1.48500 * 109.47386 * 330.00103 * 13 11 9 17 17 C 1.53007 * 117.49787 * 133.40268 * 8 7 6 18 18 C 1.53002 * 60.00050 * 252.51342 * 17 8 7 19 19 C 1.34431 * 108.45871 * 359.72544 * 6 5 4 20 20 H 1.07999 * 125.97548 * 359.96992 * 4 3 2 21 21 H 1.09007 * 109.47364 * 63.25516 * 7 6 5 22 22 H 1.08997 * 109.47290 * 183.25358 * 7 6 5 23 23 H 0.96996 * 119.99896 * 185.02389 * 12 11 9 24 24 H 1.08993 * 117.49549 * 0.02562 * 17 8 7 25 25 H 1.09000 * 117.49647 * 145.02707 * 17 8 7 26 26 H 1.08994 * 117.50068 * 252.51407 * 18 17 8 27 27 H 1.08998 * 117.50236 * 107.48815 * 18 17 8 28 28 H 1.07993 * 126.29969 * 180.25834 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.4060 0.9301 -0.6555 5 7 4.6447 0.5953 -0.4182 6 7 4.6584 -0.5476 0.3893 7 6 5.8553 -1.2368 0.8776 8 6 6.7292 -1.6447 -0.3102 9 6 6.3108 -2.9051 -1.0225 10 1 6.4332 -2.9868 -2.0924 11 6 5.7715 -3.9539 -0.3083 12 7 5.9567 -4.0284 0.9917 13 14 4.7778 -5.2692 -1.1870 14 1 5.6826 -6.3606 -1.6288 15 1 3.7552 -5.8184 -0.2608 16 1 4.1056 -4.6741 -2.3699 17 6 8.2275 -1.3480 -0.2198 18 6 7.3398 -0.5250 -1.1555 19 6 3.3875 -0.9022 0.6466 20 1 3.0787 1.7708 -1.2492 21 1 6.4180 -0.5694 1.5304 22 1 5.5607 -2.1263 1.4343 23 1 5.6404 -4.8026 1.4830 24 1 8.5906 -0.8626 0.6860 25 1 8.9108 -2.0646 -0.6755 26 1 7.4391 -0.7002 -2.2267 27 1 7.1188 0.5022 -0.8655 28 1 3.0667 -1.7413 1.2460 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307517043.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:15 Heat of formation + Delta-G solvation = 115.518607 kcal Electronic energy + Delta-G solvation = -13976.378425 eV Core-core repulsion = 11608.668625 eV Total energy + Delta-G solvation = -2367.709800 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.09365 -38.51164 -37.31933 -34.29313 -33.47063 -31.30969 -28.13736 -27.35063 -23.50427 -22.77058 -22.27607 -20.97090 -19.43913 -17.98494 -16.94144 -16.56065 -16.14849 -15.72654 -15.06741 -14.77811 -14.52677 -14.13740 -13.98034 -13.56364 -13.34115 -13.09048 -12.89691 -12.60461 -12.31579 -12.11023 -11.68619 -11.41995 -11.12749 -10.65106 -10.31263 -10.07435 -9.43702 -8.20026 -6.20308 0.69014 1.36673 1.40407 1.44825 1.52665 1.66136 1.77442 2.37971 2.69605 2.91274 3.25773 3.65656 3.96444 4.03471 4.26968 4.38591 4.61417 4.64987 4.78502 4.83740 5.05225 5.08575 5.25834 5.42669 5.60905 5.66974 5.85870 6.10868 6.35391 6.68254 6.72699 6.83497 7.37619 8.82034 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.012091 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.155307 B = 2315.194771 C = 3149.353146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.327 3.673 3 C -0.221 4.221 4 C 0.093 3.907 5 N -0.310 5.310 6 N -0.324 5.324 7 C 0.151 3.849 8 C 0.009 3.991 9 C -0.504 4.504 10 H 0.043 0.957 11 C 0.045 3.955 12 N -0.893 5.893 13 Si 0.931 3.069 14 H -0.279 1.279 15 H -0.273 1.273 16 H -0.280 1.280 17 C -0.191 4.191 18 C -0.172 4.172 19 C 0.129 3.871 20 H 0.221 0.779 21 H 0.072 0.928 22 H 0.138 0.862 23 H 0.271 0.729 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 5.347 1.153 5.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C 0.013 3.987 3 C -0.238 4.238 4 C -0.096 4.096 5 N -0.130 5.130 6 N -0.098 5.098 7 C 0.032 3.968 8 C 0.008 3.992 9 C -0.541 4.541 10 H 0.061 0.939 11 C -0.156 4.156 12 N -0.531 5.531 13 Si 0.758 3.242 14 H -0.205 1.205 15 H -0.198 1.198 16 H -0.206 1.206 17 C -0.229 4.229 18 C -0.209 4.209 19 C -0.028 4.028 20 H 0.237 0.763 21 H 0.090 0.910 22 H 0.155 0.845 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.702 5.470 1.176 5.848 hybrid contribution -0.619 -1.219 -0.426 1.432 sum -2.321 4.252 0.750 4.902 Atomic orbital electron populations 1.81226 1.12582 1.10687 1.12318 1.24550 0.91154 0.91697 0.91287 1.16073 0.85249 1.05739 1.16747 1.24430 0.88258 0.99058 0.97836 1.77181 1.21411 1.01569 1.12816 1.48829 1.06241 1.19763 1.35003 1.21956 0.82873 0.96193 0.95821 1.19155 0.90781 0.93980 0.95325 1.20654 1.40938 0.99369 0.93151 0.93905 1.25317 0.95898 0.98977 0.95428 1.69709 1.45700 1.30134 1.07563 0.85965 0.79492 0.79720 0.79062 1.20496 1.19810 1.20576 1.23037 0.95749 1.03222 1.00936 1.22757 1.05962 0.96291 0.95932 1.23254 0.84146 0.98134 0.97276 0.76293 0.90994 0.84481 0.91857 0.89628 0.91114 0.91669 0.88822 0.78797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.67 18.54 19.00 0.35 -16.32 15 2 C 0.33 10.08 15.82 88.33 1.40 11.47 15 3 C -0.22 -6.64 5.96 -21.34 -0.13 -6.76 15 4 C 0.09 2.64 12.00 85.64 1.03 3.67 15 5 N -0.31 -10.71 10.90 -56.27 -0.61 -11.32 15 6 N -0.32 -11.76 3.64 -346.21 -1.26 -13.02 15 7 C 0.15 5.97 6.17 86.38 0.53 6.50 15 8 C 0.01 0.38 1.94 -52.92 -0.10 0.28 15 9 C -0.50 -25.19 9.00 25.60 0.23 -24.96 15 10 H 0.04 2.25 7.89 -2.91 -0.02 2.23 15 11 C 0.04 2.17 5.10 84.65 0.43 2.60 15 12 N -0.89 -42.76 10.93 21.45 0.23 -42.53 15 13 Si 0.93 39.62 29.58 68.60 2.03 41.65 15 14 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 16 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 17 C -0.19 -7.75 9.88 30.60 0.30 -7.44 15 18 C -0.17 -6.91 9.18 30.60 0.28 -6.63 15 19 C 0.13 4.16 11.44 84.24 0.96 5.12 15 20 H 0.22 4.36 8.06 -2.91 -0.02 4.34 15 21 H 0.07 2.61 7.94 -2.38 -0.02 2.59 15 22 H 0.14 5.81 5.17 -2.39 -0.01 5.79 15 23 H 0.27 12.35 8.32 -92.71 -0.77 11.58 15 24 H 0.09 3.11 8.08 -2.39 -0.02 3.09 15 25 H 0.07 2.97 8.14 -2.39 -0.02 2.95 15 26 H 0.06 2.69 8.14 -2.39 -0.02 2.67 15 27 H 0.09 3.54 7.40 -2.39 -0.02 3.53 15 28 H 0.20 5.45 8.06 -2.91 -0.02 5.43 15 Total: -1.00 -53.58 258.59 6.85 -46.73 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.17 Total: 10.98 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 4.94 Total: -16.16 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -1.29 Total: -83.19 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -53.58 6.85 -46.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307517043.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.245 kcal (2) G-P(sol) polarization free energy of solvation -53.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds