Wall clock time and date at job start Mon Mar 30 2020 03:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48494 * 109.47499 * 270.00266 * 3 2 1 5 5 H 1.48500 * 109.47083 * 30.00381 * 3 2 1 6 6 H 1.48500 * 109.47062 * 149.99893 * 3 2 1 7 7 C 1.37878 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00448 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99682 * 179.97438 * 7 2 1 10 10 O 1.42897 * 109.47183 * 179.97438 * 9 7 2 11 11 C 1.42898 * 114.00401 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47407 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.46867 * 64.26293 * 12 11 10 14 14 C 1.48757 * 111.00023 * 60.84965 * 13 12 11 15 15 C 1.55137 * 101.66137 * 157.58894 * 14 13 12 16 16 H 1.09001 * 110.79666 * 82.92917 * 15 14 13 17 17 O 1.42902 * 110.79474 * 206.40445 * 15 14 13 18 18 C 1.54415 * 102.52900 * 324.66391 * 15 14 13 19 19 O 1.43494 * 106.59575 * 21.25949 * 18 15 14 20 20 H 0.96998 * 119.99890 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47500 * 60.00020 * 9 7 2 22 22 H 1.08999 * 109.47424 * 300.00358 * 9 7 2 23 23 H 1.09004 * 109.47249 * 59.99807 * 11 10 9 24 24 H 1.09000 * 109.46952 * 300.00219 * 11 10 9 25 25 H 1.09000 * 109.47005 * 304.26307 * 12 11 10 26 26 H 1.09002 * 109.47260 * 184.25951 * 12 11 10 27 27 H 1.08994 * 110.98710 * 275.68075 * 14 13 12 28 28 H 1.09001 * 110.98921 * 39.49774 * 14 13 12 29 29 H 0.96694 * 113.99971 * 174.56253 * 17 15 14 30 30 H 1.08993 * 110.03339 * 261.97618 * 18 15 14 31 31 H 1.08996 * 110.03388 * 140.53757 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9879 -2.5413 -0.0010 11 6 5.4124 -2.6542 -0.0009 12 6 5.8069 -4.1324 -0.0015 13 7 5.3522 -4.7601 -1.2493 14 6 5.9837 -4.1149 -2.4316 15 6 5.8615 -5.2320 -3.5011 16 1 4.8749 -5.2180 -3.9644 17 8 6.8882 -5.1051 -4.4869 18 6 6.0577 -6.5169 -2.6674 19 8 5.7577 -6.1725 -1.3070 20 1 -0.4850 0.8400 -0.0004 21 1 3.8753 -0.6804 0.8888 22 1 3.8745 -0.6800 -0.8911 23 1 5.8152 -2.1705 0.8890 24 1 5.8152 -2.1707 -0.8909 25 1 5.3415 -4.6329 0.8476 26 1 6.8908 -4.2193 0.0749 27 1 5.4313 -3.2246 -2.7321 28 1 7.0288 -3.8760 -2.2342 29 1 6.9067 -5.8264 -5.1306 30 1 7.0892 -6.8598 -2.7470 31 1 5.3773 -7.2946 -3.0142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385279681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:39 Heat of formation + Delta-G solvation = -111.558804 kcal Electronic energy + Delta-G solvation = -14815.996133 eV Core-core repulsion = 12098.837846 eV Total energy + Delta-G solvation = -2717.158287 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35796 -38.72271 -37.19110 -35.13641 -34.41081 -31.55498 -30.33616 -28.67356 -25.49243 -23.97093 -23.05867 -22.16335 -19.06120 -18.54363 -18.13138 -17.47454 -16.98002 -16.57422 -16.27363 -16.00948 -14.99220 -14.88768 -14.68123 -14.42966 -14.14693 -13.85432 -13.63481 -13.05540 -12.82123 -12.52193 -12.40190 -12.20262 -11.81054 -11.39214 -11.33579 -11.19288 -10.91793 -10.36655 -9.73795 -8.35723 -6.43820 1.34197 1.37659 1.48337 1.69242 2.30523 2.72842 2.96763 3.05119 3.40443 3.48572 3.88724 3.99229 4.08399 4.27897 4.30383 4.38915 4.47651 4.53832 4.60920 4.64412 4.84123 4.85776 5.01343 5.40709 5.44763 5.72200 5.95246 6.60685 6.72166 6.75335 7.20471 8.81682 Molecular weight = 217.11amu Principal moments of inertia in cm(-1) A = 0.042977 B = 0.006079 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.356593 B = 4604.819141 C = 4716.494706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.243 1.243 7 C -0.546 4.546 8 H 0.028 0.972 9 C 0.178 3.822 10 O -0.397 6.397 11 C 0.057 3.943 12 C 0.034 3.966 13 N -0.327 5.327 14 C -0.006 4.006 15 C 0.092 3.908 16 H 0.088 0.912 17 O -0.565 6.565 18 C 0.007 3.993 19 O -0.276 6.276 20 H 0.273 0.727 21 H 0.015 0.985 22 H 0.012 0.988 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.405 0.595 30 H 0.090 0.910 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.289 -7.914 -6.820 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.166 1.166 7 C -0.583 4.583 8 H 0.046 0.954 9 C 0.103 3.897 10 O -0.316 6.316 11 C -0.020 4.020 12 C -0.094 4.094 13 N -0.097 5.097 14 C -0.134 4.134 15 C 0.031 3.969 16 H 0.106 0.894 17 O -0.374 6.374 18 C -0.071 4.071 19 O -0.280 6.280 20 H 0.082 0.918 21 H 0.033 0.967 22 H 0.030 0.970 23 H 0.094 0.906 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.257 0.743 30 H 0.108 0.892 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 16.592 -7.581 -6.305 19.301 hybrid contribution 0.589 0.273 -0.301 0.716 sum 17.182 -7.308 -6.606 19.806 Atomic orbital electron populations 1.70042 1.08345 1.28766 1.51133 1.25867 0.95802 1.03459 0.93454 0.85590 0.79493 0.77341 0.79790 1.18381 1.19928 1.16637 1.21173 0.91102 0.93781 1.52291 0.95391 1.20336 0.93243 0.80965 0.95195 1.87987 1.20345 1.28050 1.95232 1.22646 0.82962 0.94731 1.01698 1.22632 1.00187 0.93671 0.92898 1.71582 1.45529 0.88946 1.03620 1.24015 1.00323 0.98467 0.90605 1.23167 0.92319 0.92184 0.89246 0.89381 1.86461 1.54259 1.52862 1.43814 1.24206 1.02477 0.97896 0.82553 1.91404 1.90640 1.19042 1.26895 0.91822 0.96731 0.96986 0.90569 0.92506 0.89413 0.89461 0.87402 0.90507 0.74326 0.89194 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.96 43.17 27.47 68.60 1.88 45.05 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 7 C -0.55 -33.61 9.99 25.60 0.26 -33.36 16 8 H 0.03 1.96 8.06 -2.92 -0.02 1.93 16 9 C 0.18 8.90 4.76 71.24 0.34 9.24 16 10 O -0.40 -18.52 10.26 -148.98 -1.53 -20.05 16 11 C 0.06 1.87 5.95 71.98 0.43 2.30 16 12 C 0.03 1.03 5.86 86.30 0.51 1.53 16 13 N -0.33 -10.57 5.95 -505.48 -3.01 -13.58 16 14 C -0.01 -0.15 5.40 86.68 0.47 0.32 16 15 C 0.09 1.96 4.47 31.81 0.14 2.11 16 16 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 17 O -0.57 -9.97 13.40 -148.98 -2.00 -11.97 16 18 C 0.01 0.14 7.70 72.46 0.56 0.70 16 19 O -0.28 -8.36 11.90 -52.17 -0.62 -8.98 16 20 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 21 H 0.02 0.71 7.20 -2.39 -0.02 0.69 16 22 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 23 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 24 H 0.06 1.69 6.81 -2.39 -0.02 1.67 16 25 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.09 2.05 8.10 -2.39 -0.02 2.03 16 27 H 0.11 3.08 7.71 -2.39 -0.02 3.06 16 28 H 0.08 1.85 7.98 -2.39 -0.02 1.83 16 29 H 0.41 2.96 9.11 -74.06 -0.67 2.28 16 30 H 0.09 1.53 8.06 -2.39 -0.02 1.52 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -75.55 264.75 -1.42 -76.97 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.39 Total: 8.13 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.16 Total: -15.99 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -2.71 Total: -73.17 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -4.15 Total: -41.00 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.05 kcal Total: -75.55 -1.42 -76.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385279681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.588 kcal (2) G-P(sol) polarization free energy of solvation -75.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds