Wall clock time and date at job start Mon Mar 30 2020 03:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48502 * 109.46818 * 239.99974 * 3 2 1 5 5 H 1.48502 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47293 * 119.99839 * 3 2 1 7 7 C 1.37881 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99771 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46883 * 183.72087 * 9 7 2 11 11 C 1.46898 * 110.99701 * 196.04192 * 10 9 7 12 12 C 1.53007 * 109.47004 * 172.08678 * 11 10 9 13 13 H 1.08996 * 109.46986 * 310.56600 * 12 11 10 14 14 O 1.42903 * 109.47138 * 70.56322 * 12 11 10 15 15 C 1.53001 * 109.47296 * 190.56286 * 12 11 10 16 16 F 1.39892 * 109.47015 * 174.99830 * 15 12 11 17 17 C 1.46899 * 110.99854 * 72.09037 * 10 9 7 18 18 C 1.53000 * 117.49981 * 278.68059 * 17 10 9 19 19 C 1.52992 * 60.00116 * 252.51579 * 18 17 10 20 20 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47372 * 63.72310 * 9 7 2 22 22 H 1.08995 * 109.47287 * 303.71966 * 9 7 2 23 23 H 1.08995 * 109.47275 * 52.08808 * 11 10 9 24 24 H 1.08994 * 109.47754 * 292.08473 * 11 10 9 25 25 H 0.96697 * 113.99778 * 60.00052 * 14 12 11 26 26 H 1.09003 * 109.46983 * 295.00681 * 15 12 11 27 27 H 1.09003 * 109.46728 * 55.00093 * 15 12 11 28 28 H 1.09004 * 115.55024 * 64.39543 * 17 10 9 29 29 H 1.09007 * 117.49687 * 0.02562 * 18 17 10 30 30 H 1.09003 * 117.49690 * 145.01912 * 18 17 10 31 31 H 1.09011 * 117.49810 * 252.51160 * 19 18 17 32 32 H 1.08996 * 117.50625 * 107.49242 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2032 -3.6142 0.0920 11 6 1.5645 -4.8833 -0.2814 12 6 2.6255 -5.9824 -0.3669 13 1 3.4607 -5.6347 -0.9749 14 8 3.0915 -6.2979 0.9466 15 6 2.0153 -7.2318 -1.0054 16 9 3.0120 -8.1963 -1.1880 17 6 2.7919 -3.6963 1.4353 18 6 3.9568 -2.7573 1.7548 19 6 4.2127 -4.2519 1.5512 20 1 -0.4850 0.8401 -0.0004 21 1 0.6750 -2.5870 -0.9195 22 1 0.5757 -2.5280 0.8567 23 1 1.0765 -4.7733 -1.2498 24 1 0.8229 -5.1520 0.4708 25 1 2.4000 -6.6147 1.5437 26 1 1.2386 -7.6308 -0.3529 27 1 1.5806 -6.9712 -1.9704 28 1 2.0944 -3.9259 2.2410 29 1 4.2861 -2.0782 0.9683 30 1 4.0258 -2.3686 2.7709 31 1 4.4502 -4.8466 2.4334 32 1 4.7106 -4.5565 0.6307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395328457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:38 Heat of formation + Delta-G solvation = -69.770923 kcal Electronic energy + Delta-G solvation = -15235.860500 eV Core-core repulsion = 12532.887061 eV Total energy + Delta-G solvation = -2702.973439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -47.53989 -38.45598 -36.06767 -33.65555 -32.40160 -30.24944 -27.12189 -24.43293 -22.21776 -21.60030 -21.42719 -19.56988 -16.80286 -16.49581 -16.27102 -15.60962 -14.91166 -14.71085 -14.54099 -14.32624 -13.87723 -13.27002 -12.61348 -12.26135 -11.92595 -11.48480 -11.29403 -11.07900 -10.86045 -10.74720 -10.69756 -10.47279 -10.06090 -9.88350 -9.37717 -9.12564 -8.78273 -8.39098 -7.33959 -6.00819 -4.00592 3.34689 3.38355 3.41482 4.26720 4.44272 4.51788 4.81122 4.90534 4.93706 5.01703 5.31767 5.34994 5.57790 5.73485 5.80945 5.92324 6.00314 6.17535 6.31722 6.48200 6.49961 6.82771 7.06161 7.18164 7.35827 7.79070 7.85162 8.09289 8.20432 8.54114 9.06920 9.62885 11.10272 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044625 B = 0.007548 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.301764 B = 3708.553288 C = 4077.716721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.053 3.947 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.068 0.932 9 C 0.196 3.804 10 N -0.508 5.508 11 C 0.030 3.970 12 C 0.082 3.918 13 H 0.114 0.886 14 O -0.539 6.539 15 C 0.031 3.969 16 F -0.216 7.216 17 C 0.033 3.967 18 C -0.168 4.168 19 C -0.137 4.137 20 H 0.260 0.740 21 H 0.025 0.975 22 H -0.006 1.006 23 H 0.078 0.922 24 H 0.027 0.973 25 H 0.363 0.637 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 -11.419 0.914 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.071 3.929 10 N -0.232 5.232 11 C -0.099 4.099 12 C 0.022 3.978 13 H 0.132 0.868 14 O -0.343 6.343 15 C -0.025 4.025 16 F -0.197 7.197 17 C -0.076 4.076 18 C -0.205 4.205 19 C -0.174 4.174 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.012 0.988 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.209 0.791 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.800 -11.021 0.311 11.662 hybrid contribution -1.043 0.652 0.724 1.427 sum 2.756 -10.369 1.035 10.779 Atomic orbital electron populations 1.69947 1.06057 1.26765 1.51572 1.24986 0.94833 0.99246 0.95695 0.86589 0.79457 0.82893 0.78662 1.20236 1.21458 1.20233 1.21213 0.93751 0.89578 1.49196 0.91384 1.19716 0.89797 0.87488 0.95900 1.61931 1.35487 1.02113 1.23691 1.22583 0.94594 0.91807 1.00895 1.22589 0.98722 0.91350 0.85119 0.86806 1.86818 1.38366 1.87462 1.21622 1.22777 0.88775 0.88110 1.02837 1.92761 1.64414 1.65632 1.96873 1.21921 0.90166 1.05007 0.90510 1.23082 1.02586 0.93439 1.01421 1.22683 0.98445 0.94646 1.01655 0.92993 0.95714 0.98809 0.90396 0.95454 0.79082 0.90912 0.90003 0.92002 0.88022 0.90417 0.90352 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.50 -13.80 8.35 -34.44 -0.29 -14.09 16 8 H 0.07 1.86 5.51 -52.49 -0.29 1.57 16 9 C 0.20 4.99 4.74 -4.97 -0.02 4.97 16 10 N -0.51 -10.57 4.59 -228.09 -1.05 -11.62 16 11 C 0.03 0.49 4.76 -3.82 -0.02 0.48 16 12 C 0.08 1.13 2.85 -26.73 -0.08 1.05 16 13 H 0.11 1.76 7.90 -51.93 -0.41 1.35 16 14 O -0.54 -7.38 8.94 -35.23 -0.32 -7.69 16 15 C 0.03 0.35 7.16 37.16 0.27 0.61 16 16 F -0.22 -2.99 17.35 2.25 0.04 -2.95 16 17 C 0.03 0.64 3.91 -67.71 -0.26 0.38 16 18 C -0.17 -3.25 9.39 -26.74 -0.25 -3.50 16 19 C -0.14 -2.33 7.20 -26.74 -0.19 -2.52 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.02 0.67 7.84 -51.93 -0.41 0.26 16 22 H -0.01 -0.17 8.05 -51.93 -0.42 -0.58 16 23 H 0.08 1.23 7.85 -51.93 -0.41 0.82 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.36 3.84 9.04 45.56 0.41 4.26 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 2.17 6.20 -51.92 -0.32 1.85 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.21 8.10 -51.92 -0.42 0.79 16 32 H 0.09 1.54 7.42 -51.93 -0.39 1.16 16 LS Contribution 265.73 15.07 4.00 4.00 Total: -1.00 -30.44 265.73 -6.44 -36.89 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -3.89 Total: 1.93 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.94 Total: -11.22 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.31 Total: -37.62 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.32 Total: -7.69 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.44 -6.44 -36.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395328457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.884 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds