Wall clock time and date at job start Mon Mar 30 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00088 * 2 1 4 4 H 1.48502 * 109.46818 * 239.99974 * 3 2 1 5 5 H 1.48502 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47293 * 119.99839 * 3 2 1 7 7 C 1.37881 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99771 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46883 * 183.72087 * 9 7 2 11 11 C 1.46898 * 110.99701 * 196.04192 * 10 9 7 12 12 C 1.53007 * 109.47004 * 172.08678 * 11 10 9 13 13 H 1.08996 * 109.46986 * 310.56600 * 12 11 10 14 14 O 1.42903 * 109.47138 * 70.56322 * 12 11 10 15 15 C 1.53001 * 109.47296 * 190.56286 * 12 11 10 16 16 F 1.39892 * 109.47015 * 174.99830 * 15 12 11 17 17 C 1.46899 * 110.99854 * 72.09037 * 10 9 7 18 18 C 1.53000 * 117.49981 * 278.68059 * 17 10 9 19 19 C 1.52992 * 60.00116 * 252.51579 * 18 17 10 20 20 H 0.97000 * 119.99859 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47372 * 63.72310 * 9 7 2 22 22 H 1.08995 * 109.47287 * 303.71966 * 9 7 2 23 23 H 1.08995 * 109.47275 * 52.08808 * 11 10 9 24 24 H 1.08994 * 109.47754 * 292.08473 * 11 10 9 25 25 H 0.96697 * 113.99778 * 60.00052 * 14 12 11 26 26 H 1.09003 * 109.46983 * 295.00681 * 15 12 11 27 27 H 1.09003 * 109.46728 * 55.00093 * 15 12 11 28 28 H 1.09004 * 115.55024 * 64.39543 * 17 10 9 29 29 H 1.09007 * 117.49687 * 0.02562 * 18 17 10 30 30 H 1.09003 * 117.49690 * 145.01912 * 18 17 10 31 31 H 1.09011 * 117.49810 * 252.51160 * 19 18 17 32 32 H 1.08996 * 117.50625 * 107.49242 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2032 -3.6142 0.0920 11 6 1.5645 -4.8833 -0.2814 12 6 2.6255 -5.9824 -0.3669 13 1 3.4607 -5.6347 -0.9749 14 8 3.0915 -6.2979 0.9466 15 6 2.0153 -7.2318 -1.0054 16 9 3.0120 -8.1963 -1.1880 17 6 2.7919 -3.6963 1.4353 18 6 3.9568 -2.7573 1.7548 19 6 4.2127 -4.2519 1.5512 20 1 -0.4850 0.8401 -0.0004 21 1 0.6750 -2.5870 -0.9195 22 1 0.5757 -2.5280 0.8567 23 1 1.0765 -4.7733 -1.2498 24 1 0.8229 -5.1520 0.4708 25 1 2.4000 -6.6147 1.5437 26 1 1.2386 -7.6308 -0.3529 27 1 1.5806 -6.9712 -1.9704 28 1 2.0944 -3.9259 2.2410 29 1 4.2861 -2.0782 0.9683 30 1 4.0258 -2.3686 2.7709 31 1 4.4502 -4.8466 2.4334 32 1 4.7106 -4.5565 0.6307 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395328457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:37 Heat of formation + Delta-G solvation = -91.829885 kcal Electronic energy + Delta-G solvation = -15236.817048 eV Core-core repulsion = 12532.887061 eV Total energy + Delta-G solvation = -2703.929987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.53695 -39.85865 -37.36666 -35.39322 -34.26721 -31.56026 -28.92425 -25.88819 -24.07987 -22.95061 -22.74953 -21.16407 -18.62341 -17.66015 -17.42252 -16.87172 -16.58065 -16.15650 -15.99203 -15.75647 -15.14262 -14.83181 -14.35500 -13.75438 -13.56327 -13.10980 -12.90673 -12.72041 -12.55925 -12.29543 -12.00525 -11.82307 -11.70211 -11.39165 -11.07931 -10.84034 -10.54711 -10.20302 -9.02746 -8.16678 -6.23923 1.41140 1.43498 1.51026 2.41541 3.03789 3.16228 3.23189 3.50443 3.71158 3.94547 4.01638 4.29259 4.31098 4.34439 4.41031 4.66074 4.68748 4.84232 4.95768 5.03656 5.07613 5.19263 5.24632 5.41606 5.55386 5.76634 6.10489 6.43027 6.67048 6.88155 6.92641 7.44634 8.94090 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044625 B = 0.007548 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.301764 B = 3708.553288 C = 4077.716721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.511 4.511 8 H 0.068 0.932 9 C 0.211 3.789 10 N -0.517 5.517 11 C 0.029 3.971 12 C 0.096 3.904 13 H 0.096 0.904 14 O -0.550 6.550 15 C 0.036 3.964 16 F -0.229 7.229 17 C 0.018 3.982 18 C -0.186 4.186 19 C -0.095 4.095 20 H 0.262 0.738 21 H 0.003 0.997 22 H -0.037 1.037 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.379 0.621 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.854 -12.270 1.250 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.549 4.549 8 H 0.086 0.914 9 C 0.085 3.915 10 N -0.241 5.241 11 C -0.100 4.100 12 C 0.036 3.964 13 H 0.114 0.886 14 O -0.356 6.356 15 C -0.020 4.020 16 F -0.210 7.210 17 C -0.091 4.091 18 C -0.223 4.223 19 C -0.132 4.132 20 H 0.071 0.929 21 H 0.021 0.979 22 H -0.019 1.019 23 H 0.097 0.903 24 H 0.055 0.945 25 H 0.228 0.772 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.667 -11.901 0.652 12.800 hybrid contribution -1.322 0.860 0.637 1.701 sum 3.344 -11.041 1.289 11.608 Atomic orbital electron populations 1.70072 1.07595 1.27655 1.52650 1.25841 0.95647 1.02882 0.95338 0.85556 0.78248 0.78546 0.79024 1.19494 1.21045 1.19398 1.21558 0.93936 0.90773 1.48623 0.91392 1.19356 0.89739 0.89054 0.93388 1.61819 1.34590 1.02900 1.24823 1.22691 0.95633 0.90552 1.01087 1.22311 0.97150 0.91630 0.85356 0.88645 1.86746 1.39443 1.87534 1.21868 1.22798 0.88505 0.86540 1.04132 1.92737 1.65261 1.66003 1.96992 1.21992 0.90988 1.06336 0.89765 1.23095 1.03338 0.94626 1.01253 1.22598 0.95510 0.92840 1.02260 0.92936 0.97853 1.01909 0.90280 0.94452 0.77245 0.88197 0.88377 0.92089 0.90399 0.89344 0.87827 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.48 13.29 21.45 0.28 -56.19 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.51 -28.68 8.35 25.60 0.21 -28.47 16 8 H 0.07 3.76 5.51 -2.91 -0.02 3.74 16 9 C 0.21 11.02 4.74 85.56 0.41 11.42 16 10 N -0.52 -21.53 4.59 -875.53 -4.02 -25.55 16 11 C 0.03 0.91 4.76 86.31 0.41 1.32 16 12 C 0.10 2.45 2.85 30.60 0.09 2.53 16 13 H 0.10 2.83 7.90 -2.39 -0.02 2.81 16 14 O -0.55 -13.60 8.94 -148.98 -1.33 -14.93 16 15 C 0.04 0.70 7.16 71.98 0.52 1.22 16 16 F -0.23 -5.79 17.35 44.97 0.78 -5.01 16 17 C 0.02 0.69 3.91 44.91 0.18 0.86 16 18 C -0.19 -7.05 9.39 30.59 0.29 -6.76 16 19 C -0.09 -3.02 7.20 30.59 0.22 -2.80 16 20 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 21 H 0.00 0.19 7.84 -2.39 -0.02 0.17 16 22 H -0.04 -2.12 8.05 -2.39 -0.02 -2.14 16 23 H 0.08 2.45 7.85 -2.39 -0.02 2.43 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.38 6.84 9.04 -74.06 -0.67 6.17 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.10 1.65 8.11 -2.39 -0.02 1.63 16 28 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.08 3.33 6.20 -2.38 -0.01 3.32 16 30 H 0.09 3.10 8.14 -2.39 -0.02 3.09 16 31 H 0.10 2.84 8.10 -2.38 -0.02 2.82 16 32 H 0.08 2.76 7.42 -2.39 -0.02 2.74 16 Total: -1.00 -65.43 265.73 0.96 -64.47 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.44 Total: 10.76 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 2.78 Total: -20.20 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -3.73 Total: -81.74 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -1.33 Total: -14.93 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.78 Total: -5.01 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -65.43 0.96 -64.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395328457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.357 kcal (2) G-P(sol) polarization free energy of solvation -65.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds