Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86801 * 120.00377 * 2 1 4 4 H 1.48499 * 109.47166 * 273.45591 * 3 2 1 5 5 H 1.48504 * 109.46993 * 33.45105 * 3 2 1 6 6 H 1.48493 * 109.47348 * 153.45650 * 3 2 1 7 7 C 1.38735 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99919 * 168.61854 * 7 2 1 9 9 N 1.37007 * 119.99545 * 348.61712 * 7 2 1 10 10 C 1.38058 * 126.19079 * 343.06849 * 9 7 2 11 11 C 1.33157 * 108.43002 * 179.97438 * 10 9 7 12 12 N 1.38585 * 108.64411 * 359.97438 * 11 10 9 13 13 N 1.40003 * 144.47591 * 180.34195 * 12 11 10 14 14 C 1.31112 * 108.72957 * 180.02562 * 13 12 11 15 15 C 1.50700 * 125.70087 * 179.90901 * 14 13 12 16 16 C 1.52998 * 117.50106 * 163.43818 * 15 14 13 17 17 C 1.52997 * 117.49972 * 94.77592 * 15 14 13 18 18 C 1.39437 * 108.59999 * 359.64290 * 14 13 12 19 19 C 1.36173 * 107.81151 * 0.02562 * 12 11 10 20 20 H 0.97003 * 119.99699 * 0.02562 * 1 2 3 21 21 H 1.07996 * 125.78386 * 359.95427 * 10 9 7 22 22 H 1.08005 * 125.67367 * 179.97438 * 11 10 9 23 23 H 1.09004 * 115.54813 * 309.10797 * 15 14 13 24 24 H 1.08996 * 117.49812 * 359.97438 * 16 15 14 25 25 H 1.09001 * 117.49963 * 145.02071 * 16 15 14 26 26 H 1.08997 * 117.49951 * 214.97934 * 17 15 14 27 27 H 1.09003 * 117.49971 * 359.97438 * 17 15 14 28 28 H 1.08003 * 126.18737 * 180.20859 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4239 2.0886 -1.3975 5 1 1.4853 2.6305 0.7718 6 1 3.5816 1.4201 0.6256 7 6 2.0090 -1.2015 0.0005 8 1 3.0731 -1.2108 -0.1840 9 7 1.3441 -2.3762 0.2352 10 6 0.0900 -2.5046 0.7979 11 6 -0.2127 -3.7998 0.8604 12 7 0.8442 -4.5276 0.3371 13 7 1.3067 -5.8166 0.0464 14 6 2.5012 -5.7251 -0.4863 15 6 3.3521 -6.8826 -0.9416 16 6 4.5239 -6.5737 -1.8755 17 6 3.2771 -7.2768 -2.4180 18 6 2.8503 -4.3775 -0.5668 19 6 1.8067 -3.6452 -0.0490 20 1 -0.4850 0.8401 -0.0004 21 1 -0.5389 -1.6923 1.1312 22 1 -1.1294 -4.2141 1.2536 23 1 3.4863 -7.6825 -0.2133 24 1 4.6792 -5.5333 -2.1610 25 1 5.4289 -7.1705 -1.7620 26 1 3.3624 -8.3359 -2.6611 27 1 2.6120 -6.6992 -3.0600 28 1 3.7731 -3.9804 -0.9632 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409436908.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = 156.601626 kcal Electronic energy + Delta-G solvation = -13898.062256 eV Core-core repulsion = 11532.133949 eV Total energy + Delta-G solvation = -2365.928307 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47321 -37.79893 -35.95389 -33.47364 -31.17835 -28.14986 -27.44807 -25.00343 -23.03599 -22.06488 -20.51066 -19.89868 -18.77598 -17.27446 -15.67300 -15.39704 -14.79658 -14.61056 -14.11691 -13.96349 -13.16433 -12.48957 -12.12397 -11.82213 -11.62494 -11.36914 -11.24848 -11.13581 -10.78773 -10.60494 -10.37374 -10.18001 -9.43679 -9.28708 -8.88786 -7.59245 -6.92455 -6.47308 -4.37858 2.80424 2.98090 3.03192 3.11766 3.41884 3.48627 3.76032 3.83669 4.32238 4.49747 4.76713 5.11510 5.26582 5.36335 5.77017 5.90310 5.94336 6.16075 6.29796 6.44403 6.44874 6.71785 6.89170 6.91447 7.01031 7.12084 7.30161 7.80360 7.97599 8.37188 8.71325 9.06317 9.26737 10.16859 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040871 B = 0.008213 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.924428 B = 3408.618488 C = 3966.428185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.947 3.053 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.324 4.324 8 H 0.111 0.889 9 N -0.289 5.289 10 C 0.061 3.939 11 C -0.097 4.097 12 N -0.294 5.294 13 N -0.349 5.349 14 C 0.113 3.887 15 C -0.062 4.062 16 C -0.169 4.169 17 C -0.171 4.171 18 C -0.334 4.334 19 C 0.216 3.784 20 H 0.282 0.718 21 H 0.200 0.800 22 H 0.164 0.836 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -3.394 -1.025 5.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.167 4.167 3 Si 0.771 3.229 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.452 4.452 8 H 0.129 0.871 9 N 0.040 4.960 10 C -0.076 4.076 11 C -0.226 4.226 12 N -0.063 5.063 13 N -0.178 5.178 14 C -0.042 4.042 15 C -0.082 4.082 16 C -0.206 4.206 17 C -0.209 4.209 18 C -0.370 4.370 19 C -0.016 4.016 20 H 0.092 0.908 21 H 0.216 0.784 22 H 0.182 0.818 23 H 0.129 0.871 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.905 -3.940 -0.691 4.944 hybrid contribution 0.742 1.457 -0.267 1.657 sum 3.647 -2.483 -0.958 4.515 Atomic orbital electron populations 1.69856 1.06248 1.29122 1.43653 1.25499 0.95850 1.00550 0.94817 0.85593 0.79370 0.79019 0.78959 1.19640 1.19982 1.18717 1.19765 0.94150 0.81016 1.50234 0.87080 1.39984 1.12761 1.02190 1.41024 1.22431 0.88758 0.95381 1.01046 1.21063 0.95373 0.87922 1.18231 1.46934 1.12882 1.04568 1.41942 1.77307 1.14012 0.94102 1.32377 1.20663 0.92500 0.92517 0.98519 1.19951 0.98813 0.96615 0.92840 1.22964 0.92062 1.02093 1.03492 1.22949 1.01172 1.00546 0.96202 1.19266 1.01585 0.90259 1.25867 1.19887 0.94127 0.82826 1.04794 0.90793 0.78362 0.81819 0.87079 0.88188 0.88747 0.88864 0.88769 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.03 10.79 55.48 0.60 -20.43 15 2 C 0.04 0.98 5.37 -17.49 -0.09 0.89 15 3 Si 0.95 18.36 29.57 -169.99 -5.03 13.34 15 4 H -0.27 -5.24 7.11 56.52 0.40 -4.83 15 5 H -0.27 -5.22 7.11 56.52 0.40 -4.81 15 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 7 C -0.32 -8.34 10.10 -15.06 -0.15 -8.49 15 8 H 0.11 2.75 7.85 -52.48 -0.41 2.34 15 9 N -0.29 -7.63 2.96 -61.43 -0.18 -7.81 15 10 C 0.06 1.48 10.06 -16.52 -0.17 1.32 15 11 C -0.10 -2.26 11.90 -16.27 -0.19 -2.46 15 12 N -0.29 -7.57 4.74 -11.83 -0.06 -7.63 15 13 N -0.35 -8.70 12.68 33.63 0.43 -8.28 15 14 C 0.11 2.53 6.83 -82.45 -0.56 1.97 15 15 C -0.06 -1.06 6.33 -91.77 -0.58 -1.64 15 16 C -0.17 -2.37 10.02 -26.69 -0.27 -2.64 15 17 C -0.17 -2.48 10.24 -26.69 -0.27 -2.76 15 18 C -0.33 -8.02 10.19 -39.37 -0.40 -8.42 15 19 C 0.22 5.69 8.09 -153.19 -1.24 4.45 15 20 H 0.28 6.36 8.31 -40.82 -0.34 6.02 15 21 H 0.20 4.65 6.28 -52.49 -0.33 4.32 15 22 H 0.16 3.19 8.06 -52.48 -0.42 2.77 15 23 H 0.11 1.73 8.14 -51.93 -0.42 1.30 15 24 H 0.10 1.48 7.13 -51.93 -0.37 1.11 15 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.09 1.49 8.14 -51.93 -0.42 1.06 15 28 H 0.13 2.80 7.38 -52.48 -0.39 2.41 15 LS Contribution 248.75 15.07 3.75 3.75 Total: -1.00 -29.29 248.75 -7.17 -36.45 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -2.75 Total: 8.40 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -3.93 Total: -17.80 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.79 Total: -44.14 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.29 -7.17 -36.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409436908.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.055 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds