Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.40501 * 119.81596 * 2 1 4 4 C 1.36575 * 119.68333 * 179.97438 * 3 2 1 5 5 N 1.39727 * 120.35134 * 179.72841 * 4 3 2 6 6 C 1.41694 * 119.29275 * 359.97438 * 4 3 2 7 7 N 1.32408 * 131.63219 * 180.02562 * 6 4 3 8 8 C 1.34730 * 109.16519 * 179.97438 * 7 6 4 9 9 C 1.41331 * 126.18289 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99469 * 179.97438 * 9 8 7 11 11 C 1.39701 * 120.00581 * 359.97438 * 9 8 7 12 12 N 1.30995 * 119.99875 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00225 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47239 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47114 * 120.00204 * 13 11 9 16 16 H 1.48505 * 109.47053 * 239.99932 * 13 11 9 17 17 C 1.39427 * 107.62903 * 0.02562 * 8 7 6 18 18 N 1.36149 * 106.71472 * 359.96347 * 17 8 7 19 19 C 1.34839 * 119.81316 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47234 * 89.99802 * 1 2 3 21 21 H 1.09002 * 109.47231 * 210.00186 * 1 2 3 22 22 H 1.09002 * 109.47097 * 330.00292 * 1 2 3 23 23 H 1.07996 * 120.15858 * 0.02562 * 3 2 1 24 24 H 0.97006 * 120.00399 * 359.97438 * 5 4 3 25 25 H 0.97004 * 120.00047 * 179.97438 * 5 4 3 26 26 H 0.96990 * 119.99911 * 180.02562 * 12 11 9 27 27 H 1.08001 * 126.64622 * 180.02562 * 17 8 7 28 28 H 1.07996 * 119.61594 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2055 1.2190 0.0000 4 6 3.5712 1.2159 0.0005 5 7 4.2801 2.4200 -0.0052 6 6 4.2617 -0.0215 0.0016 7 7 5.5545 -0.3074 0.0028 8 6 5.7115 -1.6456 0.0041 9 6 6.9417 -2.3413 0.0060 10 1 6.9512 -3.4213 0.0074 11 6 8.1454 -1.6322 0.0062 12 7 8.1338 -0.3223 0.0041 13 14 9.7713 -2.5518 0.0096 14 1 9.5129 -4.0141 0.0123 15 1 10.5482 -2.1881 -1.2027 16 1 10.5454 -2.1842 1.2224 17 6 4.4410 -2.2198 0.0031 18 7 3.5471 -1.1929 0.0021 19 6 2.1773 -1.1699 0.0005 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6651 2.1541 0.0004 24 1 3.8022 3.2642 -0.0099 25 1 5.2501 2.4118 -0.0044 26 1 8.9695 0.1701 0.0039 27 1 4.2105 -3.2749 0.0041 28 1 1.6280 -2.0998 0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000669369224.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = 74.552519 kcal Electronic energy + Delta-G solvation = -13936.341127 eV Core-core repulsion = 11566.854904 eV Total energy + Delta-G solvation = -2369.486223 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98863 -36.73603 -34.63260 -33.32257 -31.28213 -29.20478 -27.83345 -26.19428 -24.66874 -21.81611 -20.61808 -19.86113 -17.42906 -16.48408 -16.02805 -14.89627 -14.83117 -14.49799 -14.44197 -13.59930 -12.92736 -12.78644 -12.50132 -12.02619 -11.44777 -11.30200 -11.15011 -11.06815 -10.98318 -10.38927 -10.21064 -10.02348 -9.06989 -8.32607 -8.20049 -7.19025 -6.36886 -6.17932 -4.19279 2.06125 2.48540 3.11495 3.19885 3.24504 3.93171 4.12700 4.23181 4.65801 4.76651 5.36686 5.41627 5.62172 5.69168 5.77170 5.91711 6.04320 6.26020 6.46613 6.65560 6.87295 7.08100 7.19138 7.32845 7.60517 7.77118 8.06168 8.29283 8.44421 8.64020 8.92737 9.11826 9.82065 10.56069 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.052434 B = 0.008205 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.878957 B = 3411.591693 C = 3930.325469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.101 4.101 3 C -0.249 4.249 4 C 0.257 3.743 5 N -0.863 5.863 6 C 0.157 3.843 7 N -0.461 5.461 8 C 0.229 3.771 9 C -0.444 4.444 10 H 0.082 0.918 11 C 0.074 3.926 12 N -0.761 5.761 13 Si 0.907 3.093 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.232 4.232 18 N -0.330 5.330 19 C -0.012 4.012 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.116 0.884 24 H 0.392 0.608 25 H 0.409 0.591 26 H 0.269 0.731 27 H 0.154 0.846 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.310 2.487 -0.020 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.279 4.279 4 C 0.148 3.852 5 N -0.402 5.402 6 C -0.086 4.086 7 N -0.186 5.186 8 C 0.101 3.899 9 C -0.479 4.479 10 H 0.100 0.900 11 C -0.146 4.146 12 N -0.386 5.386 13 Si 0.732 3.268 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.363 4.363 18 N -0.004 5.004 19 C -0.136 4.136 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.134 0.866 24 H 0.220 0.780 25 H 0.238 0.762 26 H 0.079 0.921 27 H 0.171 0.829 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.508 3.131 -0.017 8.135 hybrid contribution 0.239 -0.732 -0.006 0.770 sum -7.269 2.399 -0.023 7.655 Atomic orbital electron populations 1.20458 0.91009 1.01804 1.01367 1.18594 0.95309 0.91409 1.05389 1.19708 0.91010 0.97323 1.19904 1.16421 0.89957 0.83793 0.95054 1.42212 1.09761 1.03810 1.84391 1.20913 0.89307 0.86245 1.12126 1.71507 1.08158 1.15295 1.23682 1.18452 0.91142 0.87429 0.92895 1.18645 0.88069 0.93671 1.47466 0.90004 1.25827 1.00567 0.94822 0.93410 1.70090 1.27601 1.06569 1.34346 0.86291 0.81687 0.80615 0.78178 1.18689 1.20205 1.20210 1.22682 0.88783 0.91374 1.33448 1.42068 1.04552 1.08362 1.45415 1.20817 0.82008 0.98694 1.12068 0.92112 0.92373 0.92057 0.86627 0.78018 0.76154 0.92066 0.82859 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.00 36.00 0.36 -0.77 15 2 C -0.10 -1.78 5.84 -104.98 -0.61 -2.40 15 3 C -0.25 -4.56 9.58 -39.33 -0.38 -4.94 15 4 C 0.26 5.43 6.78 -83.54 -0.57 4.86 15 5 N -0.86 -15.32 9.10 32.54 0.30 -15.02 15 6 C 0.16 4.01 7.65 -155.75 -1.19 2.81 15 7 N -0.46 -13.20 9.50 -10.20 -0.10 -13.29 15 8 C 0.23 6.57 6.66 -84.98 -0.57 6.00 15 9 C -0.44 -12.47 9.38 -37.86 -0.35 -12.82 15 10 H 0.08 2.15 7.84 -52.48 -0.41 1.73 15 11 C 0.07 1.98 5.49 -17.36 -0.10 1.89 15 12 N -0.76 -21.29 11.93 55.54 0.66 -20.63 15 13 Si 0.91 19.64 29.56 -169.99 -5.02 14.61 15 14 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 16 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 17 C -0.23 -5.95 11.80 -15.19 -0.18 -6.13 15 18 N -0.33 -7.97 2.93 -61.35 -0.18 -8.15 15 19 C -0.01 -0.23 10.53 -16.45 -0.17 -0.40 15 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.06 0.66 8.07 -51.93 -0.42 0.24 15 22 H 0.06 0.69 8.09 -51.93 -0.42 0.27 15 23 H 0.12 1.76 8.06 -52.49 -0.42 1.33 15 24 H 0.39 5.34 8.84 -40.82 -0.36 4.98 15 25 H 0.41 7.81 8.84 -40.82 -0.36 7.45 15 26 H 0.27 6.84 8.30 -40.82 -0.34 6.51 15 27 H 0.15 3.47 8.06 -52.49 -0.42 3.05 15 28 H 0.14 2.27 8.06 -52.49 -0.42 1.84 15 LS Contribution 250.36 15.07 3.77 3.77 Total: -1.00 -31.94 250.36 -7.13 -39.07 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -2.80 Total: 11.53 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -3.76 Total: -11.89 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.68 Total: -57.09 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.94 -7.13 -39.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669369224.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.620 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds