Wall clock time and date at job start Mon Mar 30 2020 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.40501 * 119.81596 * 2 1 4 4 C 1.36575 * 119.68333 * 179.97438 * 3 2 1 5 5 N 1.39727 * 120.35134 * 179.72841 * 4 3 2 6 6 C 1.41694 * 119.29275 * 359.97438 * 4 3 2 7 7 N 1.32408 * 131.63219 * 180.02562 * 6 4 3 8 8 C 1.34730 * 109.16519 * 179.97438 * 7 6 4 9 9 C 1.41331 * 126.18289 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99469 * 179.97438 * 9 8 7 11 11 C 1.39701 * 120.00581 * 359.97438 * 9 8 7 12 12 N 1.30995 * 119.99875 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00225 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47239 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47114 * 120.00204 * 13 11 9 16 16 H 1.48505 * 109.47053 * 239.99932 * 13 11 9 17 17 C 1.39427 * 107.62903 * 0.02562 * 8 7 6 18 18 N 1.36149 * 106.71472 * 359.96347 * 17 8 7 19 19 C 1.34839 * 119.81316 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47234 * 89.99802 * 1 2 3 21 21 H 1.09002 * 109.47231 * 210.00186 * 1 2 3 22 22 H 1.09002 * 109.47097 * 330.00292 * 1 2 3 23 23 H 1.07996 * 120.15858 * 0.02562 * 3 2 1 24 24 H 0.97006 * 120.00399 * 359.97438 * 5 4 3 25 25 H 0.97004 * 120.00047 * 179.97438 * 5 4 3 26 26 H 0.96990 * 119.99911 * 180.02562 * 12 11 9 27 27 H 1.08001 * 126.64622 * 180.02562 * 17 8 7 28 28 H 1.07996 * 119.61594 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2055 1.2190 0.0000 4 6 3.5712 1.2159 0.0005 5 7 4.2801 2.4200 -0.0052 6 6 4.2617 -0.0215 0.0016 7 7 5.5545 -0.3074 0.0028 8 6 5.7115 -1.6456 0.0041 9 6 6.9417 -2.3413 0.0060 10 1 6.9512 -3.4213 0.0074 11 6 8.1454 -1.6322 0.0062 12 7 8.1338 -0.3223 0.0041 13 14 9.7713 -2.5518 0.0096 14 1 9.5129 -4.0141 0.0123 15 1 10.5482 -2.1881 -1.2027 16 1 10.5454 -2.1842 1.2224 17 6 4.4410 -2.2198 0.0031 18 7 3.5471 -1.1929 0.0021 19 6 2.1773 -1.1699 0.0005 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6651 2.1541 0.0004 24 1 3.8022 3.2642 -0.0099 25 1 5.2501 2.4118 -0.0044 26 1 8.9695 0.1701 0.0039 27 1 4.2105 -3.2749 0.0041 28 1 1.6280 -2.0998 0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000669369224.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:47 Heat of formation + Delta-G solvation = 53.226707 kcal Electronic energy + Delta-G solvation = -13937.265884 eV Core-core repulsion = 11566.854904 eV Total energy + Delta-G solvation = -2370.410980 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.77641 -38.37150 -36.20650 -35.18677 -32.97893 -30.90396 -29.48941 -27.87939 -26.31098 -23.53067 -22.22152 -21.75837 -19.21476 -18.22043 -17.67335 -16.66549 -16.36766 -16.26627 -16.12462 -15.17742 -14.48837 -14.27016 -14.03797 -13.35243 -12.99096 -12.90977 -12.76506 -12.72920 -12.42558 -12.30519 -11.93338 -11.81575 -10.90681 -10.15079 -9.92822 -9.11149 -8.31704 -7.81380 -6.24407 0.46552 0.79457 1.42372 1.42506 1.58339 2.24397 2.34291 2.37633 2.99231 3.17002 3.65613 3.73375 4.01235 4.26299 4.46189 4.70216 4.85595 4.99261 5.01012 5.19279 5.25511 5.35885 5.53383 5.64079 5.72240 6.06996 6.26703 6.54767 6.77416 6.98505 7.09653 7.13918 7.89274 8.64064 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.052434 B = 0.008205 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.878957 B = 3411.591693 C = 3930.325469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.082 4.082 3 C -0.232 4.232 4 C 0.233 3.767 5 N -0.852 5.852 6 C 0.130 3.870 7 N -0.506 5.506 8 C 0.186 3.814 9 C -0.485 4.485 10 H 0.085 0.915 11 C 0.025 3.975 12 N -0.804 5.804 13 Si 0.990 3.010 14 H -0.255 1.255 15 H -0.270 1.270 16 H -0.270 1.270 17 C -0.250 4.250 18 N -0.334 5.334 19 C -0.042 4.042 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.158 0.842 24 H 0.413 0.587 25 H 0.401 0.599 26 H 0.273 0.727 27 H 0.172 0.828 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 3.032 -0.021 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.263 4.263 4 C 0.124 3.876 5 N -0.392 5.392 6 C -0.114 4.114 7 N -0.232 5.232 8 C 0.057 3.943 9 C -0.519 4.519 10 H 0.103 0.897 11 C -0.191 4.191 12 N -0.430 5.430 13 Si 0.811 3.189 14 H -0.178 1.178 15 H -0.195 1.195 16 H -0.195 1.195 17 C -0.380 4.380 18 N -0.006 5.006 19 C -0.165 4.165 20 H 0.099 0.901 21 H 0.094 0.906 22 H 0.102 0.898 23 H 0.175 0.825 24 H 0.244 0.756 25 H 0.229 0.771 26 H 0.083 0.917 27 H 0.190 0.810 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.840 3.698 -0.019 10.512 hybrid contribution 0.588 -0.753 -0.008 0.956 sum -9.252 2.945 -0.026 9.709 Atomic orbital electron populations 1.20600 0.86686 1.03886 1.03233 1.19360 0.98176 0.90189 1.01009 1.20319 0.89886 0.99522 1.16534 1.16767 0.91166 0.83375 0.96294 1.42131 1.09385 1.03899 1.83770 1.21550 0.89176 0.88251 1.12405 1.71359 1.10413 1.15575 1.25856 1.18953 0.92643 0.88284 0.94423 1.19004 0.89214 0.94087 1.49618 0.89680 1.26789 1.04253 0.95677 0.92387 1.70217 1.28757 1.08301 1.35726 0.85060 0.76224 0.79283 0.78378 1.17843 1.19470 1.19484 1.22861 0.88577 0.92506 1.34069 1.42191 1.06044 1.07426 1.44982 1.21581 0.80405 1.01251 1.13291 0.90118 0.90637 0.89796 0.82462 0.75556 0.77106 0.91702 0.81047 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 10.00 71.23 0.71 -0.99 15 2 C -0.08 -2.57 5.84 -20.10 -0.12 -2.69 15 3 C -0.23 -7.63 9.58 22.43 0.21 -7.42 15 4 C 0.23 9.62 6.78 38.35 0.26 9.88 15 5 N -0.85 -29.54 9.10 -50.98 -0.46 -30.01 15 6 C 0.13 6.77 7.65 134.30 1.03 7.80 15 7 N -0.51 -30.39 9.50 -186.18 -1.77 -32.16 15 8 C 0.19 11.24 6.66 39.75 0.26 11.50 15 9 C -0.48 -28.63 9.38 23.38 0.22 -28.41 15 10 H 0.09 4.69 7.84 -2.91 -0.02 4.67 15 11 C 0.02 1.38 5.49 85.17 0.47 1.85 15 12 N -0.80 -47.10 11.93 21.79 0.26 -46.84 15 13 Si 0.99 41.64 29.56 68.60 2.03 43.66 15 14 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 15 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 17 C -0.25 -13.28 11.80 84.31 1.00 -12.28 15 18 N -0.33 -16.23 2.93 -348.00 -1.02 -17.25 15 19 C -0.04 -1.59 10.53 83.10 0.88 -0.71 15 20 H 0.08 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.07 1.28 8.07 -2.39 -0.02 1.26 15 22 H 0.08 1.34 8.09 -2.39 -0.02 1.32 15 23 H 0.16 3.86 8.06 -2.91 -0.02 3.83 15 24 H 0.41 10.35 8.84 -92.70 -0.82 9.53 15 25 H 0.40 15.61 8.84 -92.71 -0.82 14.79 15 26 H 0.27 14.52 8.30 -92.72 -0.77 13.75 15 27 H 0.17 8.03 8.06 -2.91 -0.02 8.01 15 28 H 0.16 5.03 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -74.00 250.36 3.52 -70.49 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -0.44 Total: 33.58 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.92 Total: -21.47 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -2.99 Total: -126.26 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -74.00 3.52 -70.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669369224.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.713 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds