Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00311 * 2 1 4 4 H 1.48505 * 109.47075 * 270.00451 * 3 2 1 5 5 H 1.48501 * 109.46877 * 29.99980 * 3 2 1 6 6 H 1.48498 * 109.47488 * 149.99800 * 3 2 1 7 7 C 1.38814 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99864 * 204.36791 * 7 2 1 9 9 N 1.36929 * 119.99991 * 24.37535 * 7 2 1 10 10 C 1.46509 * 119.99910 * 8.96292 * 9 7 2 11 11 C 1.52996 * 109.47250 * 270.00554 * 10 9 7 12 12 H 1.08997 * 115.55072 * 29.41373 * 11 10 9 13 13 C 1.52999 * 117.49852 * 175.09116 * 11 10 9 14 14 C 1.53001 * 117.49522 * 243.74497 * 11 10 9 15 15 F 1.39898 * 117.50484 * 0.02562 * 14 11 10 16 16 F 1.39903 * 117.49813 * 145.02056 * 14 11 10 17 17 C 1.46505 * 120.00422 * 188.97070 * 9 7 2 18 18 C 1.52997 * 117.49475 * 346.44098 * 17 9 7 19 19 C 1.52997 * 117.49637 * 55.09992 * 17 9 7 20 20 H 0.97000 * 119.99912 * 356.49771 * 1 2 3 21 21 H 1.09000 * 109.46925 * 30.00789 * 10 9 7 22 22 H 1.08997 * 109.46693 * 150.00209 * 10 9 7 23 23 H 1.08998 * 117.49863 * 214.97960 * 13 11 10 24 24 H 1.08999 * 117.49854 * 359.96800 * 13 11 10 25 25 H 1.08998 * 115.54885 * 200.77381 * 17 9 7 26 26 H 1.09006 * 117.50038 * 215.00536 * 18 17 9 27 27 H 1.09002 * 117.49868 * 0.02562 * 18 17 9 28 28 H 1.09000 * 117.50071 * 359.97438 * 19 17 9 29 29 H 1.08994 * 117.49535 * 144.98198 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0181 -1.2436 0.3865 9 7 1.4171 -2.3354 -0.4884 10 6 0.1334 -2.2464 -1.1889 11 6 -1.0086 -2.3914 -0.1812 12 1 -0.7923 -2.0414 0.8281 13 6 -2.4363 -2.2110 -0.7008 14 6 -1.9285 -3.6054 -0.3260 15 9 -1.6607 -4.4982 -1.3693 16 9 -2.4280 -4.1809 0.8472 17 6 2.0660 -3.6368 -0.3108 18 6 3.5296 -3.6414 0.1350 19 6 2.4293 -4.0564 1.1149 20 1 -0.4850 0.8385 0.0513 21 1 0.0578 -1.2800 -1.6873 22 1 0.0679 -3.0433 -1.9296 23 1 -3.1594 -1.7424 -0.0332 24 1 -2.5619 -1.9884 -1.7604 25 1 1.7473 -4.4189 -0.9999 26 1 4.1739 -4.4266 -0.2608 27 1 4.0095 -2.6762 0.2966 28 1 2.1859 -3.3640 1.9208 29 1 2.3493 -5.1145 1.3639 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691143765.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -13.044736 kcal Electronic energy + Delta-G solvation = -15202.814112 eV Core-core repulsion = 12378.840201 eV Total energy + Delta-G solvation = -2823.973912 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.86556 -46.56273 -37.37699 -35.48878 -33.15886 -30.33353 -26.21969 -23.68194 -21.75162 -21.44212 -20.12909 -19.83377 -17.18170 -16.29188 -15.79280 -15.46798 -15.02488 -14.34437 -13.85843 -13.28700 -13.15419 -12.87658 -12.73719 -12.47461 -11.90156 -11.55082 -10.93382 -10.91797 -10.80004 -10.68756 -10.21118 -9.95380 -9.78701 -9.71217 -9.28720 -8.92784 -8.39744 -6.90508 -5.90858 -3.19964 3.33466 3.41874 3.42388 3.86888 4.23620 4.40566 4.82239 5.05599 5.24512 5.39678 5.52644 5.58998 5.84528 6.03986 6.14433 6.19381 6.41438 6.45234 6.52025 6.55512 6.86678 6.91487 7.06967 7.25661 7.46232 7.75624 8.21006 9.09323 9.73290 10.17532 11.14971 Molecular weight = 217.10amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.012668 C = 0.009445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.545110 B = 2209.814456 C = 2963.951657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.257 4.257 8 H 0.082 0.918 9 N -0.561 5.561 10 C 0.201 3.799 11 C -0.063 4.063 12 H 0.136 0.864 13 C -0.173 4.173 14 C 0.136 3.864 15 F -0.176 7.176 16 F -0.180 7.180 17 C 0.128 3.872 18 C -0.205 4.205 19 C -0.225 4.225 20 H 0.256 0.744 21 H 0.095 0.905 22 H 0.029 0.971 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -4.306 -1.596 4.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.386 4.386 8 H 0.100 0.900 9 N -0.277 5.277 10 C 0.075 3.925 11 C -0.085 4.085 12 H 0.153 0.847 13 C -0.212 4.212 14 C 0.099 3.901 15 F -0.157 7.157 16 F -0.160 7.160 17 C 0.018 3.982 18 C -0.244 4.244 19 C -0.266 4.266 20 H 0.066 0.934 21 H 0.112 0.888 22 H 0.047 0.953 23 H 0.122 0.878 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.727 -4.155 -1.665 4.798 hybrid contribution 0.196 0.629 0.330 0.737 sum -1.532 -3.527 -1.335 4.070 Atomic orbital electron populations 1.70077 1.04936 1.25592 1.54114 1.24757 0.95384 0.98056 1.01465 0.86252 0.79165 0.83487 0.77700 1.21478 1.21943 1.20677 1.19345 0.97458 0.85147 1.36624 0.89999 1.43777 1.20083 1.01088 1.62760 1.20381 0.81624 1.00210 0.90285 1.24574 0.91283 0.87013 1.05637 0.84656 1.24116 1.01388 0.92325 1.03321 1.21205 1.10833 0.81612 0.76427 1.92895 1.94541 1.71236 1.57018 1.92919 1.88765 1.87010 1.47338 1.21039 0.93591 0.89172 0.94374 1.23161 0.93005 1.02134 1.06083 1.23385 1.06324 0.99681 0.97238 0.93372 0.88753 0.95331 0.87795 0.87699 0.88697 0.90483 0.88632 0.89219 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.16 8.70 55.49 0.48 -22.67 15 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.06 15 3 Si 0.90 20.71 29.62 -169.99 -5.04 15.68 15 4 H -0.29 -6.67 7.11 56.52 0.40 -6.26 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.26 -6.57 9.18 -15.06 -0.14 -6.71 15 8 H 0.08 2.09 5.81 -52.49 -0.31 1.79 15 9 N -0.56 -13.32 2.89 -165.66 -0.48 -13.80 15 10 C 0.20 4.52 5.23 -4.04 -0.02 4.50 15 11 C -0.06 -1.36 4.29 -90.62 -0.39 -1.75 15 12 H 0.14 3.34 7.41 -51.93 -0.38 2.96 15 13 C -0.17 -3.16 10.22 -26.70 -0.27 -3.43 15 14 C 0.14 2.70 5.20 -26.70 -0.14 2.56 15 15 F -0.18 -3.50 16.48 2.25 0.04 -3.46 15 16 F -0.18 -3.66 17.60 2.25 0.04 -3.62 15 17 C 0.13 2.68 6.61 -67.93 -0.45 2.23 15 18 C -0.20 -3.89 9.84 -26.69 -0.26 -4.15 15 19 C -0.23 -4.42 10.18 -26.69 -0.27 -4.70 15 20 H 0.26 6.48 8.32 -40.82 -0.34 6.14 15 21 H 0.09 2.30 6.31 -51.93 -0.33 1.97 15 22 H 0.03 0.60 6.95 -51.93 -0.36 0.24 15 23 H 0.10 1.77 8.14 -51.93 -0.42 1.34 15 24 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15 25 H 0.10 1.84 8.10 -51.93 -0.42 1.42 15 26 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.10 1.94 6.14 -51.93 -0.32 1.62 15 28 H 0.09 1.94 8.14 -51.93 -0.42 1.51 15 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 LS Contribution 252.03 15.07 3.80 3.80 Total: -1.00 -25.72 252.03 -6.55 -32.27 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -3.37 Total: 3.31 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -2.03 Total: -11.50 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.00 Total: -36.48 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.08 Total: -7.08 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.04 Total: 15.68 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -25.72 -6.55 -32.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691143765.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.228 kcal (2) G-P(sol) polarization free energy of solvation -25.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds