Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00311 * 2 1 4 4 H 1.48505 * 109.47075 * 270.00451 * 3 2 1 5 5 H 1.48501 * 109.46877 * 29.99980 * 3 2 1 6 6 H 1.48498 * 109.47488 * 149.99800 * 3 2 1 7 7 C 1.38814 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99864 * 204.36791 * 7 2 1 9 9 N 1.36929 * 119.99991 * 24.37535 * 7 2 1 10 10 C 1.46509 * 119.99910 * 8.96292 * 9 7 2 11 11 C 1.52996 * 109.47250 * 270.00554 * 10 9 7 12 12 H 1.08997 * 115.55072 * 29.41373 * 11 10 9 13 13 C 1.52999 * 117.49852 * 175.09116 * 11 10 9 14 14 C 1.53001 * 117.49522 * 243.74497 * 11 10 9 15 15 F 1.39898 * 117.50484 * 0.02562 * 14 11 10 16 16 F 1.39903 * 117.49813 * 145.02056 * 14 11 10 17 17 C 1.46505 * 120.00422 * 188.97070 * 9 7 2 18 18 C 1.52997 * 117.49475 * 346.44098 * 17 9 7 19 19 C 1.52997 * 117.49637 * 55.09992 * 17 9 7 20 20 H 0.97000 * 119.99912 * 356.49771 * 1 2 3 21 21 H 1.09000 * 109.46925 * 30.00789 * 10 9 7 22 22 H 1.08997 * 109.46693 * 150.00209 * 10 9 7 23 23 H 1.08998 * 117.49863 * 214.97960 * 13 11 10 24 24 H 1.08999 * 117.49854 * 359.96800 * 13 11 10 25 25 H 1.08998 * 115.54885 * 200.77381 * 17 9 7 26 26 H 1.09006 * 117.50038 * 215.00536 * 18 17 9 27 27 H 1.09002 * 117.49868 * 0.02562 * 18 17 9 28 28 H 1.09000 * 117.50071 * 359.97438 * 19 17 9 29 29 H 1.08994 * 117.49535 * 144.98198 * 19 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0181 -1.2436 0.3865 9 7 1.4171 -2.3354 -0.4884 10 6 0.1334 -2.2464 -1.1889 11 6 -1.0086 -2.3914 -0.1812 12 1 -0.7923 -2.0414 0.8281 13 6 -2.4363 -2.2110 -0.7008 14 6 -1.9285 -3.6054 -0.3260 15 9 -1.6607 -4.4982 -1.3693 16 9 -2.4280 -4.1809 0.8472 17 6 2.0660 -3.6368 -0.3108 18 6 3.5296 -3.6414 0.1350 19 6 2.4293 -4.0564 1.1149 20 1 -0.4850 0.8385 0.0513 21 1 0.0578 -1.2800 -1.6873 22 1 0.0679 -3.0433 -1.9296 23 1 -3.1594 -1.7424 -0.0332 24 1 -2.5619 -1.9884 -1.7604 25 1 1.7473 -4.4189 -0.9999 26 1 4.1739 -4.4266 -0.2608 27 1 4.0095 -2.6762 0.2966 28 1 2.1859 -3.3640 1.9208 29 1 2.3493 -5.1145 1.3639 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691143765.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -25.131712 kcal Electronic energy + Delta-G solvation = -15203.338243 eV Core-core repulsion = 12378.840201 eV Total energy + Delta-G solvation = -2824.498042 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.46643 -48.16363 -39.07018 -37.09701 -34.93853 -32.17041 -28.03735 -25.46745 -23.29663 -23.00182 -21.79342 -21.58579 -18.84805 -18.07037 -17.51426 -17.11770 -16.63668 -16.09582 -15.65980 -14.88306 -14.78514 -14.49941 -14.34028 -14.18068 -13.56203 -13.33313 -12.70770 -12.63927 -12.55929 -12.34298 -12.00475 -11.69394 -11.52581 -11.36400 -10.89993 -10.64061 -10.19622 -8.71897 -7.83174 -5.13065 1.49545 1.54176 1.59275 2.29843 2.50204 2.65860 3.13764 3.32189 3.50088 3.76997 3.91910 3.99887 4.26983 4.47117 4.53540 4.65824 4.77122 4.90974 4.99658 5.02049 5.19346 5.28710 5.44552 5.50859 5.66402 5.79883 6.32785 7.18272 7.88650 8.29204 9.20177 Molecular weight = 217.10amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.012668 C = 0.009445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.545110 B = 2209.814456 C = 2963.951657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.039 4.039 3 Si 0.956 3.044 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.267 4.267 8 H 0.076 0.924 9 N -0.577 5.577 10 C 0.207 3.793 11 C -0.079 4.079 12 H 0.100 0.900 13 C -0.147 4.147 14 C 0.139 3.861 15 F -0.174 7.174 16 F -0.183 7.183 17 C 0.105 3.895 18 C -0.188 4.188 19 C -0.220 4.220 20 H 0.252 0.748 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.119 0.881 24 H 0.125 0.875 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -4.955 -2.112 5.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.236 4.236 3 Si 0.787 3.213 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.396 4.396 8 H 0.094 0.906 9 N -0.294 5.294 10 C 0.082 3.918 11 C -0.101 4.101 12 H 0.118 0.882 13 C -0.185 4.185 14 C 0.103 3.897 15 F -0.155 7.155 16 F -0.164 7.164 17 C -0.004 4.004 18 C -0.227 4.227 19 C -0.261 4.261 20 H 0.061 0.939 21 H 0.090 0.910 22 H 0.059 0.941 23 H 0.137 0.863 24 H 0.144 0.856 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.708 -4.826 -2.179 5.564 hybrid contribution 0.218 0.774 0.515 0.955 sum -1.490 -4.052 -1.664 4.627 Atomic orbital electron populations 1.70200 1.05407 1.25499 1.54599 1.25301 0.96185 1.00039 1.02030 0.85433 0.78071 0.80643 0.77194 1.21646 1.22437 1.20608 1.19467 0.97375 0.86237 1.36544 0.90629 1.43925 1.20735 1.01741 1.63029 1.20238 0.81749 0.99311 0.90551 1.24170 0.92883 0.89248 1.03810 0.88156 1.24217 0.99154 0.90385 1.04770 1.21147 1.10327 0.81839 0.76396 1.92898 1.94578 1.71222 1.56789 1.92912 1.88671 1.87097 1.47712 1.21341 0.94960 0.88640 0.95473 1.23172 0.92374 1.02304 1.04844 1.23319 1.06471 1.00499 0.95783 0.93855 0.91041 0.94120 0.86284 0.85640 0.87044 0.87120 0.90340 0.91909 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.11 8.70 21.65 0.19 -46.92 15 2 C -0.04 -2.03 4.91 84.86 0.42 -1.61 15 3 Si 0.96 42.83 29.62 68.60 2.03 44.86 15 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 15 5 H -0.30 -13.45 7.11 99.48 0.71 -12.74 15 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 7 C -0.27 -13.74 9.18 84.04 0.77 -12.97 15 8 H 0.08 3.90 5.81 -2.91 -0.02 3.89 15 9 N -0.58 -27.36 2.89 -678.03 -1.96 -29.32 15 10 C 0.21 9.27 5.23 86.38 0.45 9.72 15 11 C -0.08 -3.37 4.29 -10.80 -0.05 -3.41 15 12 H 0.10 5.04 7.41 -2.39 -0.02 5.02 15 13 C -0.15 -5.09 10.22 30.62 0.31 -4.77 15 14 C 0.14 5.33 5.20 30.62 0.16 5.49 15 15 F -0.17 -6.55 16.48 44.97 0.74 -5.81 15 16 F -0.18 -7.23 17.60 44.97 0.79 -6.44 15 17 C 0.10 4.25 6.61 44.99 0.30 4.55 15 18 C -0.19 -6.81 9.84 30.62 0.30 -6.51 15 19 C -0.22 -8.36 10.18 30.62 0.31 -8.05 15 20 H 0.25 12.79 8.32 -92.71 -0.77 12.02 15 21 H 0.07 3.50 6.31 -2.39 -0.02 3.48 15 22 H 0.04 1.68 6.95 -2.39 -0.02 1.66 15 23 H 0.12 3.77 8.14 -2.39 -0.02 3.75 15 24 H 0.13 3.84 8.14 -2.39 -0.02 3.82 15 25 H 0.11 4.10 8.10 -2.39 -0.02 4.08 15 26 H 0.11 3.25 8.14 -2.38 -0.02 3.23 15 27 H 0.08 3.13 6.14 -2.39 -0.01 3.11 15 28 H 0.06 2.72 8.14 -2.39 -0.02 2.70 15 29 H 0.10 3.23 8.14 -2.39 -0.02 3.21 15 Total: -1.00 -53.82 252.03 5.92 -47.90 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.15 Total: 13.31 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 2.98 Total: -17.57 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -1.77 Total: -76.25 kcal Atomic # 9 Polarization: -13.78 SS G_CDS: 1.53 Total: -12.25 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -53.82 5.92 -47.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691143765.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.770 kcal (2) G-P(sol) polarization free energy of solvation -53.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds