Wall clock time and date at job start Mon Mar 30 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.47110 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47258 * 299.99999 * 3 2 1 6 6 H 1.48508 * 109.46891 * 59.99959 * 3 2 1 7 7 C 1.38806 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00545 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00396 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.67122 * 51.76657 * 11 10 9 13 13 C 1.54886 * 110.75179 * 174.99915 * 11 10 9 14 14 C 1.54266 * 104.19457 * 156.25658 * 13 11 10 15 15 H 1.09001 * 117.41501 * 116.36814 * 14 13 11 16 16 C 1.53874 * 106.59920 * 336.39110 * 14 13 11 17 17 H 1.08994 * 121.33452 * 138.62684 * 16 14 13 18 18 C 1.54272 * 106.59660 * 359.97438 * 16 14 13 19 19 C 1.52999 * 118.19949 * 272.21043 * 14 13 11 20 20 F 1.39907 * 117.46363 * 201.21105 * 19 14 13 21 21 F 1.39895 * 117.46221 * 346.01792 * 19 14 13 22 22 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 23 23 H 0.97010 * 119.99695 * 0.02562 * 9 7 2 24 24 H 1.08993 * 109.47452 * 60.00465 * 10 9 7 25 25 H 1.09000 * 109.47175 * 300.00255 * 10 9 7 26 26 H 1.09004 * 110.49058 * 274.93078 * 13 11 10 27 27 H 1.09004 * 110.48989 * 37.57830 * 13 11 10 28 28 H 1.08994 * 110.48503 * 264.93134 * 18 16 14 29 29 H 1.08996 * 110.48485 * 142.29089 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3344 -4.7018 -0.8025 13 6 1.8039 -6.1744 -0.1275 14 6 0.8251 -7.1985 0.4833 15 1 0.4294 -7.9702 -0.1771 16 6 -0.0927 -6.4145 1.4375 17 1 -1.1629 -6.6147 1.4866 18 6 0.3609 -4.9413 1.3738 19 6 0.8889 -7.4493 1.9912 20 9 0.3572 -8.6522 2.4683 21 9 2.0105 -6.9720 2.6777 22 1 -0.4850 0.8401 0.0004 23 1 0.3555 -2.3880 -0.0005 24 1 2.6847 -3.7146 0.8894 25 1 2.6848 -3.7145 -0.8905 26 1 1.9961 -6.4081 -1.1747 27 1 2.7361 -6.1540 0.4371 28 1 1.0597 -4.7221 2.1810 29 1 -0.5001 -4.2747 1.4219 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693389556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:12 Heat of formation + Delta-G solvation = -83.594676 kcal Electronic energy + Delta-G solvation = -14547.108898 eV Core-core repulsion = 11720.075712 eV Total energy + Delta-G solvation = -2827.033187 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.68707 -48.37042 -40.20889 -36.59404 -33.89822 -31.52485 -29.41274 -27.17374 -24.59325 -22.57883 -21.25941 -21.09688 -19.09462 -18.80177 -17.82742 -16.90386 -16.62252 -16.14080 -15.53307 -15.17230 -15.03162 -14.73492 -14.60321 -14.06674 -13.82359 -13.49374 -13.13909 -12.82790 -12.46323 -12.36895 -12.11953 -12.01659 -11.67752 -11.58085 -11.18223 -10.92147 -10.78116 -8.98430 -7.94962 -5.23167 1.48070 1.48563 1.58731 1.99688 2.05325 2.56662 3.17730 3.21597 3.39122 3.60896 3.88755 4.06821 4.15089 4.22268 4.30712 4.48497 4.64740 4.75094 4.87874 4.96758 5.04153 5.06178 5.11326 5.27546 5.47493 5.53418 6.28121 7.34670 8.10699 8.34540 9.28752 Molecular weight = 217.10amu Principal moments of inertia in cm(-1) A = 0.065888 B = 0.005888 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.860093 B = 4754.006076 C = 4782.978655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.158 3.842 11 C -0.087 4.087 12 H 0.085 0.915 13 C -0.087 4.087 14 C -0.136 4.136 15 H 0.165 0.835 16 C -0.154 4.154 17 H 0.154 0.846 18 C -0.088 4.088 19 C 0.192 3.808 20 F -0.166 7.166 21 F -0.175 7.175 22 H 0.251 0.749 23 H 0.376 0.624 24 H 0.015 0.985 25 H 0.025 0.975 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 -15.968 0.583 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.106 4.106 12 H 0.103 0.897 13 C -0.125 4.125 14 C -0.155 4.155 15 H 0.183 0.817 16 C -0.173 4.173 17 H 0.172 0.828 18 C -0.126 4.126 19 C 0.156 3.844 20 F -0.146 7.146 21 F -0.156 7.156 22 H 0.060 0.940 23 H 0.208 0.792 24 H 0.033 0.967 25 H 0.043 0.957 26 H 0.124 0.876 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.989 -15.896 0.616 15.938 hybrid contribution 0.039 0.974 0.484 1.088 sum 1.028 -14.922 1.100 14.998 Atomic orbital electron populations 1.69813 1.06520 1.25999 1.59571 1.25539 0.96420 1.01002 1.03717 0.85091 0.78212 0.79871 0.76695 1.19179 1.21883 1.22087 1.19676 0.91506 0.85505 1.41100 0.90835 1.42554 1.05712 1.01075 1.89342 1.20797 0.93762 0.84643 0.97610 1.22359 0.97192 0.93898 0.97133 0.89676 1.21992 0.97162 0.90637 1.02665 1.24730 1.00270 1.01339 0.89141 0.81724 1.24688 0.99166 0.92723 1.00721 0.82811 1.21931 1.00568 0.92534 0.97571 1.20560 0.86981 0.83975 0.92910 1.92994 1.85691 1.45932 1.89994 1.92967 1.53051 1.87655 1.81893 0.93982 0.79216 0.96681 0.95682 0.87636 0.90861 0.92140 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.04 13.06 21.65 0.28 -58.75 15 2 C -0.07 -4.29 5.50 84.86 0.47 -3.82 15 3 Si 0.97 46.24 29.55 68.60 2.03 48.26 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 15 6 H -0.29 -13.96 7.11 99.48 0.71 -13.26 15 7 C -0.25 -13.82 9.99 84.03 0.84 -12.98 15 8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 15 9 N -0.74 -37.59 5.52 -343.46 -1.90 -39.48 15 10 C 0.16 6.21 5.70 86.38 0.49 6.70 15 11 C -0.09 -2.59 2.91 -9.50 -0.03 -2.62 15 12 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 13 C -0.09 -1.95 5.96 31.67 0.19 -1.77 15 14 C -0.14 -2.70 6.92 -10.07 -0.07 -2.77 15 15 H 0.17 2.25 8.14 -2.39 -0.02 2.23 15 16 C -0.15 -3.52 6.92 -10.07 -0.07 -3.59 15 17 H 0.15 2.84 8.14 -2.39 -0.02 2.82 15 18 C -0.09 -2.62 5.88 31.68 0.19 -2.43 15 19 C 0.19 4.71 5.13 30.59 0.16 4.87 15 20 F -0.17 -4.09 17.60 44.97 0.79 -3.30 15 21 F -0.18 -5.13 16.19 44.97 0.73 -4.40 15 22 H 0.25 14.81 8.31 -92.71 -0.77 14.04 15 23 H 0.38 19.92 7.67 -92.70 -0.71 19.21 15 24 H 0.02 0.62 7.99 -2.39 -0.02 0.60 15 25 H 0.03 0.97 8.14 -2.39 -0.02 0.95 15 26 H 0.11 1.90 8.14 -2.39 -0.02 1.88 15 27 H 0.07 1.78 7.56 -2.38 -0.02 1.76 15 28 H 0.06 2.01 7.44 -2.39 -0.02 1.99 15 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 Total: -1.00 -63.96 253.81 4.54 -59.42 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.44 Total: 16.66 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 2.16 Total: -18.41 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -1.61 Total: -98.24 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 1.52 Total: -7.70 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -63.96 4.54 -59.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693389556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.174 kcal (2) G-P(sol) polarization free energy of solvation -63.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds