Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48492 * 109.47123 * 275.41357 * 3 2 1 5 5 H 1.48499 * 109.47203 * 35.41528 * 3 2 1 6 6 H 1.48507 * 109.46955 * 155.41290 * 3 2 1 7 7 C 1.39946 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99717 * 341.75637 * 7 2 1 9 9 C 1.41393 * 120.00427 * 161.75188 * 7 2 1 10 10 C 1.40741 * 120.37131 * 330.26906 * 9 7 2 11 11 C 1.37281 * 119.50344 * 180.24927 * 10 9 7 12 12 C 1.39373 * 120.90298 * 359.85838 * 11 10 9 13 13 C 1.38149 * 120.06184 * 359.58517 * 12 11 10 14 14 C 1.38320 * 119.92322 * 0.87067 * 13 12 11 15 15 C 1.50675 * 122.52370 * 180.47390 * 13 12 11 16 16 C 1.52717 * 110.65773 * 342.53252 * 15 13 12 17 17 H 1.09002 * 109.71694 * 291.26035 * 16 15 13 18 18 N 1.46908 * 109.68141 * 170.72457 * 16 15 13 19 19 C 1.53309 * 108.37815 * 51.00251 * 16 15 13 20 20 C 1.50725 * 117.52178 * 179.64636 * 12 11 10 21 21 H 0.96999 * 119.99856 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.25423 * 0.26522 * 10 9 7 23 23 H 1.08002 * 119.54771 * 179.83307 * 11 10 9 24 24 H 1.07990 * 119.82653 * 179.49577 * 14 13 12 25 25 H 1.09000 * 109.38555 * 222.11468 * 15 13 12 26 26 H 1.08997 * 109.05335 * 102.73180 * 15 13 12 27 27 H 1.00897 * 110.99547 * 61.07574 * 18 16 15 28 28 H 1.00893 * 110.99752 * 185.03775 * 18 16 15 29 29 H 1.09005 * 109.68026 * 170.26164 * 19 16 15 30 30 H 1.09003 * 109.67931 * 49.72192 * 19 16 15 31 31 H 1.09002 * 109.24764 * 282.52708 * 20 12 11 32 32 H 1.08997 * 109.24475 * 41.98298 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4098 0.5826 7 6 2.0080 -1.2120 0.0005 8 1 1.5087 -2.1237 0.2938 9 6 3.3686 -1.2430 -0.3829 10 6 3.8672 -0.3121 -1.3132 11 6 5.1901 -0.3617 -1.6767 12 6 6.0458 -1.3190 -1.1348 13 6 5.5694 -2.2302 -0.2122 14 6 4.2375 -2.2030 0.1601 15 6 6.4474 -3.2811 0.4163 16 6 7.7282 -3.4681 -0.3941 17 1 7.4922 -3.9264 -1.3545 18 7 8.6620 -4.3263 0.3474 19 6 8.3620 -2.0907 -0.6211 20 6 7.4815 -1.3093 -1.5937 21 1 -0.4850 0.8400 0.0004 22 1 3.2141 0.4359 -1.7379 23 1 5.5728 0.3506 -2.3927 24 1 3.8649 -2.9211 0.8753 25 1 5.9068 -4.2268 0.4575 26 1 6.7048 -2.9707 1.4289 27 1 8.2640 -5.2394 0.5080 28 1 9.5469 -4.3966 -0.1321 29 1 9.3594 -2.2108 -1.0442 30 1 8.4267 -1.5558 0.3264 31 1 7.5460 -1.7646 -2.5820 32 1 7.8341 -0.2794 -1.6489 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713805050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -5.113772 kcal Electronic energy + Delta-G solvation = -14249.290705 eV Core-core repulsion = 11979.890236 eV Total energy + Delta-G solvation = -2269.400469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.96962 -36.26651 -33.64271 -32.19563 -31.14040 -29.37507 -26.97981 -25.22524 -22.25055 -21.33664 -20.73907 -18.92910 -17.05108 -15.70699 -15.36217 -15.10529 -14.88425 -13.84223 -13.58879 -13.28499 -13.04279 -12.60982 -12.40321 -12.00374 -11.77286 -11.51351 -11.19556 -10.75641 -10.72244 -10.59211 -10.16058 -10.03627 -9.60577 -9.48588 -9.05662 -8.61045 -7.56436 -7.38067 -6.91676 -4.43936 2.60358 2.65543 3.12382 3.23330 3.34232 4.01028 4.46820 4.59366 5.10204 5.22144 5.37514 5.55684 5.75594 5.87909 5.97675 6.03778 6.06819 6.28021 6.32107 6.35431 6.41000 6.58036 6.63499 6.87216 6.97341 7.21693 7.27623 7.44004 7.51276 7.62859 7.83830 7.91014 8.16398 8.39087 8.69756 8.84225 10.11264 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050388 B = 0.008251 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.554680 B = 3392.537749 C = 3748.189940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.244 1.244 7 C -0.451 4.451 8 H 0.089 0.911 9 C 0.093 3.907 10 C -0.232 4.232 11 C -0.079 4.079 12 C -0.205 4.205 13 C -0.040 4.040 14 C -0.213 4.213 15 C -0.066 4.066 16 C 0.092 3.908 17 H 0.035 0.965 18 N -0.849 5.849 19 C -0.105 4.105 20 C -0.055 4.055 21 H 0.284 0.716 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.338 0.662 28 H 0.336 0.664 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.827 -2.721 -1.481 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.480 4.480 8 H 0.107 0.893 9 C 0.091 3.909 10 C -0.251 4.251 11 C -0.097 4.097 12 C -0.206 4.206 13 C -0.041 4.041 14 C -0.232 4.232 15 C -0.104 4.104 16 C -0.018 4.018 17 H 0.053 0.947 18 N -0.378 5.378 19 C -0.143 4.143 20 C -0.093 4.093 21 H 0.094 0.906 22 H 0.117 0.883 23 H 0.110 0.890 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.469 -2.090 -0.878 11.691 hybrid contribution 0.021 0.187 -0.911 0.930 sum 11.490 -1.903 -1.789 11.783 Atomic orbital electron populations 1.69701 1.08072 1.30122 1.35760 1.26126 0.94671 1.01663 0.90896 0.86335 0.81363 0.79868 0.78728 1.19761 1.21874 1.16762 1.19457 0.93216 0.96070 1.39229 0.89289 1.17644 0.92956 0.90842 0.89503 1.21005 0.95585 1.04509 1.03966 1.20589 0.93659 0.97076 0.98358 1.18867 0.94441 1.01800 1.05471 1.19087 0.93812 0.95106 0.96059 1.20939 0.92266 1.04788 1.05230 1.20369 0.93413 0.97507 0.99099 1.21307 0.92568 0.93425 0.94528 0.94680 1.58759 1.06824 1.17776 1.54481 1.21499 0.97394 0.95241 1.00214 1.20118 0.92726 0.99048 0.97411 0.90560 0.88273 0.89035 0.88369 0.92108 0.90812 0.85003 0.85189 0.92840 0.91376 0.93030 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.04 13.93 55.55 0.77 -21.26 16 2 C 0.08 2.27 5.41 -17.34 -0.09 2.17 16 3 Si 0.91 21.27 24.52 -169.99 -4.17 17.10 16 4 H -0.27 -6.15 6.71 56.52 0.38 -5.77 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.24 -5.88 6.86 56.52 0.39 -5.49 16 7 C -0.45 -12.46 9.58 -37.74 -0.36 -12.82 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 9 C 0.09 2.42 5.10 -106.94 -0.54 1.88 16 10 C -0.23 -5.70 7.19 -38.98 -0.28 -5.98 16 11 C -0.08 -1.73 9.57 -39.51 -0.38 -2.11 16 12 C -0.20 -4.23 5.77 -104.22 -0.60 -4.83 16 13 C -0.04 -0.84 5.73 -104.64 -0.60 -1.44 16 14 C -0.21 -5.05 9.34 -38.74 -0.36 -5.41 16 15 C -0.07 -1.14 5.25 -28.04 -0.15 -1.29 16 16 C 0.09 1.35 3.27 -67.69 -0.22 1.13 16 17 H 0.04 0.53 8.10 -51.93 -0.42 0.11 16 18 N -0.85 -10.17 9.26 -4.65 -0.04 -10.21 16 19 C -0.11 -1.55 5.53 -26.73 -0.15 -1.70 16 20 C -0.06 -0.91 5.66 -28.02 -0.16 -1.07 16 21 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 22 H 0.10 2.44 4.73 -52.49 -0.25 2.19 16 23 H 0.09 1.77 8.05 -52.49 -0.42 1.35 16 24 H 0.10 2.23 8.05 -52.49 -0.42 1.81 16 25 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.34 3.56 9.05 -39.29 -0.36 3.20 16 28 H 0.34 3.34 8.99 -39.30 -0.35 2.99 16 29 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 257.86 15.07 3.89 3.89 Total: -1.00 -27.97 257.86 -7.80 -35.77 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.35 Total: 6.20 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: -3.90 Total: -31.47 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.73 Total: -31.47 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.17 Total: 17.10 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.97 -7.80 -35.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713805050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.653 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds