Wall clock time and date at job start Mon Mar 30 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48492 * 109.47123 * 275.41357 * 3 2 1 5 5 H 1.48499 * 109.47203 * 35.41528 * 3 2 1 6 6 H 1.48507 * 109.46955 * 155.41290 * 3 2 1 7 7 C 1.39946 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99717 * 341.75637 * 7 2 1 9 9 C 1.41393 * 120.00427 * 161.75188 * 7 2 1 10 10 C 1.40741 * 120.37131 * 330.26906 * 9 7 2 11 11 C 1.37281 * 119.50344 * 180.24927 * 10 9 7 12 12 C 1.39373 * 120.90298 * 359.85838 * 11 10 9 13 13 C 1.38149 * 120.06184 * 359.58517 * 12 11 10 14 14 C 1.38320 * 119.92322 * 0.87067 * 13 12 11 15 15 C 1.50675 * 122.52370 * 180.47390 * 13 12 11 16 16 C 1.52717 * 110.65773 * 342.53252 * 15 13 12 17 17 H 1.09002 * 109.71694 * 291.26035 * 16 15 13 18 18 N 1.46908 * 109.68141 * 170.72457 * 16 15 13 19 19 C 1.53309 * 108.37815 * 51.00251 * 16 15 13 20 20 C 1.50725 * 117.52178 * 179.64636 * 12 11 10 21 21 H 0.96999 * 119.99856 * 359.97438 * 1 2 3 22 22 H 1.07995 * 120.25423 * 0.26522 * 10 9 7 23 23 H 1.08002 * 119.54771 * 179.83307 * 11 10 9 24 24 H 1.07990 * 119.82653 * 179.49577 * 14 13 12 25 25 H 1.09000 * 109.38555 * 222.11468 * 15 13 12 26 26 H 1.08997 * 109.05335 * 102.73180 * 15 13 12 27 27 H 1.00897 * 110.99547 * 61.07574 * 18 16 15 28 28 H 1.00893 * 110.99752 * 185.03775 * 18 16 15 29 29 H 1.09005 * 109.68026 * 170.26164 * 19 16 15 30 30 H 1.09003 * 109.67931 * 49.72192 * 19 16 15 31 31 H 1.09002 * 109.24764 * 282.52708 * 20 12 11 32 32 H 1.08997 * 109.24475 * 41.98298 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3938 5 1 1.5016 2.6169 0.8113 6 1 3.5924 1.4098 0.5826 7 6 2.0080 -1.2120 0.0005 8 1 1.5087 -2.1237 0.2938 9 6 3.3686 -1.2430 -0.3829 10 6 3.8672 -0.3121 -1.3132 11 6 5.1901 -0.3617 -1.6767 12 6 6.0458 -1.3190 -1.1348 13 6 5.5694 -2.2302 -0.2122 14 6 4.2375 -2.2030 0.1601 15 6 6.4474 -3.2811 0.4163 16 6 7.7282 -3.4681 -0.3941 17 1 7.4922 -3.9264 -1.3545 18 7 8.6620 -4.3263 0.3474 19 6 8.3620 -2.0907 -0.6211 20 6 7.4815 -1.3093 -1.5937 21 1 -0.4850 0.8400 0.0004 22 1 3.2141 0.4359 -1.7379 23 1 5.5728 0.3506 -2.3927 24 1 3.8649 -2.9211 0.8753 25 1 5.9068 -4.2268 0.4575 26 1 6.7048 -2.9707 1.4289 27 1 8.2640 -5.2394 0.5080 28 1 9.5469 -4.3966 -0.1321 29 1 9.3594 -2.2108 -1.0442 30 1 8.4267 -1.5558 0.3264 31 1 7.5460 -1.7646 -2.5820 32 1 7.8341 -0.2794 -1.6489 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713805050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:49 Heat of formation + Delta-G solvation = -23.368504 kcal Electronic energy + Delta-G solvation = -14250.082290 eV Core-core repulsion = 11979.890236 eV Total energy + Delta-G solvation = -2270.192054 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55921 -37.77416 -35.43989 -33.71018 -32.71228 -31.00381 -28.45674 -26.99295 -23.68548 -22.92917 -22.48336 -20.45956 -18.88052 -17.45390 -16.66612 -16.41611 -16.35418 -15.49896 -15.28799 -14.78202 -14.54869 -14.29485 -13.92062 -13.68524 -13.40151 -13.07950 -12.76227 -12.53930 -12.28314 -12.05043 -11.78871 -11.67425 -11.40195 -11.11947 -10.87649 -9.58091 -9.38606 -9.18080 -8.90504 -6.48959 0.77210 0.82762 1.23287 1.38155 1.46493 2.11028 2.56073 3.45359 3.54499 3.86578 4.01365 4.29752 4.33278 4.40631 4.46331 4.63742 4.71469 4.78241 4.94666 4.97361 5.06961 5.09206 5.17055 5.21475 5.40317 5.45321 5.62209 5.82539 5.93080 6.07568 6.25304 6.30123 6.44275 6.69501 6.75698 6.84408 8.18821 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050388 B = 0.008251 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.554680 B = 3392.537749 C = 3748.189940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.047 3.953 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.052 0.948 9 C 0.069 3.931 10 C -0.246 4.246 11 C -0.087 4.087 12 C -0.189 4.189 13 C -0.044 4.044 14 C -0.229 4.229 15 C -0.065 4.065 16 C 0.099 3.901 17 H 0.036 0.964 18 N -0.848 5.848 19 C -0.103 4.103 20 C -0.057 4.057 21 H 0.293 0.707 22 H 0.096 0.904 23 H 0.125 0.875 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.347 0.653 28 H 0.352 0.648 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.584 -2.279 -2.443 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.166 4.166 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.067 3.933 10 C -0.265 4.265 11 C -0.105 4.105 12 C -0.190 4.190 13 C -0.045 4.045 14 C -0.249 4.249 15 C -0.103 4.103 16 C -0.012 4.012 17 H 0.054 0.946 18 N -0.380 5.380 19 C -0.140 4.140 20 C -0.094 4.094 21 H 0.103 0.897 22 H 0.114 0.886 23 H 0.143 0.857 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.160 0.840 28 H 0.166 0.834 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.240 -1.665 -1.846 15.441 hybrid contribution -0.934 -0.103 -0.638 1.136 sum 14.306 -1.768 -2.484 14.627 Atomic orbital electron populations 1.69728 1.09113 1.31327 1.37933 1.26787 0.95317 1.04119 0.90396 0.85483 0.79468 0.76614 0.79456 1.18249 1.20243 1.18058 1.19436 0.94682 0.95539 1.42472 0.92981 1.17795 0.92594 0.92397 0.90532 1.21117 0.97013 1.04350 1.04029 1.21022 0.92719 0.97998 0.98713 1.19553 0.96846 0.99541 1.03047 1.19533 0.93158 0.96018 0.95789 1.21144 0.93697 1.04493 1.05521 1.20380 0.94429 0.96328 0.99134 1.21141 0.91645 0.94289 0.94102 0.94562 1.58649 1.07049 1.18157 1.54146 1.21488 0.98619 0.94477 0.99456 1.20233 0.89676 1.00896 0.98624 0.89680 0.88630 0.85702 0.88844 0.91633 0.90920 0.83977 0.83387 0.89586 0.92394 0.91057 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.53 13.93 21.83 0.30 -48.23 16 2 C 0.05 2.65 5.41 85.26 0.46 3.11 16 3 Si 0.97 44.51 24.52 68.60 1.68 46.19 16 4 H -0.26 -11.12 6.71 99.48 0.67 -10.46 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -12.17 6.86 99.48 0.68 -11.49 16 7 C -0.49 -28.90 9.58 23.46 0.22 -28.68 16 8 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 9 C 0.07 3.70 5.10 -21.36 -0.11 3.59 16 10 C -0.25 -12.03 7.19 22.66 0.16 -11.87 16 11 C -0.09 -3.59 9.57 22.32 0.21 -3.38 16 12 C -0.19 -7.22 5.77 -19.60 -0.11 -7.33 16 13 C -0.04 -1.81 5.73 -19.87 -0.11 -1.92 16 14 C -0.23 -11.11 9.34 22.82 0.21 -10.89 16 15 C -0.07 -2.10 5.25 29.75 0.16 -1.94 16 16 C 0.10 2.51 3.27 44.92 0.15 2.66 16 17 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 18 N -0.85 -16.84 9.26 -168.62 -1.56 -18.40 16 19 C -0.10 -2.49 5.53 30.60 0.17 -2.33 16 20 C -0.06 -1.58 5.66 29.76 0.17 -1.41 16 21 H 0.29 14.91 8.30 -92.71 -0.77 14.14 16 22 H 0.10 4.67 4.73 -2.91 -0.01 4.65 16 23 H 0.13 4.31 8.05 -2.91 -0.02 4.29 16 24 H 0.09 4.47 8.05 -2.92 -0.02 4.44 16 25 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 26 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.35 6.05 9.05 -89.70 -0.81 5.24 16 28 H 0.35 5.33 8.99 -89.70 -0.81 4.52 16 29 H 0.09 1.60 8.13 -2.38 -0.02 1.58 16 30 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 Total: -1.00 -62.75 257.86 1.46 -61.30 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.55 Total: 19.54 kcal Atomic # 6 Polarization: -61.97 SS G_CDS: 1.58 Total: -60.39 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -1.26 Total: -66.63 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.68 Total: 46.19 kcal Total: -62.75 1.46 -61.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713805050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.927 kcal (2) G-P(sol) polarization free energy of solvation -62.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds