Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47251 * 300.00247 * 3 2 1 6 6 H 1.48501 * 109.46821 * 60.00092 * 3 2 1 7 7 C 1.39943 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99901 * 161.45614 * 7 2 1 9 9 C 1.41399 * 119.99769 * 341.46036 * 7 2 1 10 10 C 1.40740 * 120.37459 * 336.13260 * 9 7 2 11 11 C 1.37271 * 119.50187 * 180.23153 * 10 9 7 12 12 C 1.39374 * 120.90283 * 359.94540 * 11 10 9 13 13 C 1.38095 * 120.03337 * 359.79345 * 12 11 10 14 14 C 1.38322 * 119.92943 * 0.33715 * 13 12 11 15 15 C 1.50676 * 122.52338 * 180.43467 * 13 12 11 16 16 C 1.52707 * 110.61189 * 342.44838 * 15 13 12 17 17 C 1.53335 * 108.37139 * 51.08100 * 16 15 13 18 18 H 1.08996 * 109.68309 * 49.63062 * 17 16 15 19 19 N 1.46901 * 109.71340 * 170.17420 * 17 16 15 20 20 C 1.50728 * 117.51138 * 179.73153 * 12 11 10 21 21 H 0.97006 * 119.99663 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.25036 * 0.24863 * 10 9 7 23 23 H 1.08002 * 119.55084 * 179.97438 * 11 10 9 24 24 H 1.07999 * 119.82298 * 179.86098 * 14 13 12 25 25 H 1.09007 * 109.24684 * 222.15774 * 15 13 12 26 26 H 1.08994 * 109.24704 * 102.74297 * 15 13 12 27 27 H 1.08997 * 109.68835 * 291.36171 * 16 15 13 28 28 H 1.08997 * 109.68860 * 170.80291 * 16 15 13 29 29 H 1.00896 * 110.99706 * 178.93317 * 19 17 16 30 30 H 1.00900 * 110.99787 * 302.88135 * 19 17 16 31 31 H 1.09005 * 109.24802 * 42.02883 * 20 12 11 32 32 H 1.09001 * 109.25278 * 282.56280 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0459 -1.2363 -0.2969 9 6 1.3560 -2.4045 0.3904 10 6 0.2264 -2.3567 1.2287 11 6 -0.3898 -3.5258 1.6000 12 6 0.0872 -4.7583 1.1573 13 6 1.1915 -4.8154 0.3302 14 6 1.8280 -3.6486 -0.0528 15 6 1.7485 -6.1157 -0.1889 16 6 1.2328 -7.2903 0.6395 17 6 -0.2944 -7.1854 0.7284 18 1 -0.7106 -7.0356 -0.2678 19 7 -0.8424 -8.4164 1.3136 20 6 -0.6441 -5.9936 1.6168 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1528 -1.4074 1.5770 23 1 -1.2564 -3.4900 2.2436 24 1 2.6929 -3.6954 -0.6979 25 1 2.8368 -6.0877 -0.1342 26 1 1.4447 -6.2475 -1.2273 27 1 1.6623 -7.2503 1.6405 28 1 1.5090 -8.2284 0.1583 29 1 -1.8464 -8.3612 1.3971 30 1 -0.5682 -9.2253 0.7764 31 1 -1.7181 -5.8136 1.5702 32 1 -0.3613 -6.2169 2.6455 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713807769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = -6.729253 kcal Electronic energy + Delta-G solvation = -14155.298922 eV Core-core repulsion = 11885.828401 eV Total energy + Delta-G solvation = -2269.470522 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.74300 -36.08206 -33.62553 -32.07499 -30.79076 -28.18490 -27.77031 -24.61664 -22.50741 -21.04628 -20.50555 -18.70576 -16.87486 -15.59306 -15.20812 -15.03307 -14.57104 -13.74717 -13.42312 -13.23399 -12.83351 -12.31107 -12.23133 -11.70950 -11.47454 -11.42204 -10.97239 -10.86066 -10.72792 -10.48363 -10.18571 -10.01087 -9.41111 -9.29692 -9.04915 -8.51671 -7.33648 -7.14456 -6.73692 -4.31192 2.77736 3.03140 3.08555 3.13984 3.21040 3.94980 4.60055 4.70360 5.23153 5.34306 5.62975 5.67536 5.88769 6.03601 6.14182 6.24642 6.27669 6.40786 6.49962 6.53690 6.57051 6.74950 7.01365 7.10636 7.26075 7.37612 7.46726 7.58448 7.63860 7.90494 8.08757 8.17226 8.33226 8.67004 8.93139 9.01033 10.20929 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.065041 B = 0.006983 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.392454 B = 4008.878556 C = 4330.967970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.109 3.891 10 C -0.159 4.159 11 C -0.105 4.105 12 C -0.199 4.199 13 C -0.054 4.054 14 C -0.229 4.229 15 C -0.073 4.073 16 C -0.103 4.103 17 C 0.091 3.909 18 H 0.033 0.967 19 N -0.849 5.849 20 C -0.045 4.045 21 H 0.279 0.721 22 H 0.118 0.882 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.337 0.663 30 H 0.335 0.665 31 H 0.048 0.952 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 -7.800 0.463 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.197 1.197 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.178 4.178 11 C -0.123 4.123 12 C -0.201 4.201 13 C -0.054 4.054 14 C -0.249 4.249 15 C -0.110 4.110 16 C -0.141 4.141 17 C -0.019 4.019 18 H 0.051 0.949 19 N -0.378 5.378 20 C -0.083 4.083 21 H 0.090 0.910 22 H 0.136 0.864 23 H 0.104 0.896 24 H 0.108 0.892 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.146 0.854 31 H 0.066 0.934 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.338 -7.442 1.085 7.529 hybrid contribution -0.268 0.804 -1.002 1.313 sum -0.606 -6.638 0.083 6.666 Atomic orbital electron populations 1.69844 1.07610 1.29015 1.35655 1.25899 0.94675 1.01273 0.92235 0.86306 0.81062 0.81090 0.78513 1.18414 1.20058 1.19720 1.19584 0.98368 0.91353 1.40092 0.90501 1.17505 0.91095 0.92029 0.88681 1.21285 0.99199 0.96699 1.00612 1.20650 0.98839 0.92710 1.00117 1.18785 1.00504 0.93078 1.07741 1.19003 0.95398 0.93317 0.97703 1.20870 1.04194 0.92290 1.07558 1.20363 0.99598 0.92676 0.98384 1.21482 0.94618 0.97232 1.00813 1.21334 0.95172 0.89665 0.95764 0.94863 1.58785 1.16041 1.04603 1.58409 1.20085 0.98141 0.91671 0.98364 0.91012 0.86448 0.89639 0.89234 0.91813 0.92272 0.91404 0.92929 0.85139 0.85367 0.93368 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.87 10.97 55.55 0.61 -20.26 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.53 9.06 -37.74 -0.34 -12.87 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 9 C 0.11 2.97 5.56 -106.99 -0.60 2.37 16 10 C -0.16 -4.21 8.71 -38.99 -0.34 -4.55 16 11 C -0.10 -2.51 9.57 -39.51 -0.38 -2.89 16 12 C -0.20 -4.46 5.77 -104.24 -0.60 -5.06 16 13 C -0.05 -1.22 5.73 -104.66 -0.60 -1.82 16 14 C -0.23 -5.73 9.33 -38.79 -0.36 -6.09 16 15 C -0.07 -1.31 5.66 -28.04 -0.16 -1.47 16 16 C -0.10 -1.64 5.55 -26.71 -0.15 -1.79 16 17 C 0.09 1.45 3.27 -67.69 -0.22 1.23 16 18 H 0.03 0.55 8.10 -51.93 -0.42 0.13 16 19 N -0.85 -10.98 9.26 -4.65 -0.04 -11.02 16 20 C -0.05 -0.83 5.25 -28.02 -0.15 -0.97 16 21 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 22 H 0.12 3.20 6.16 -52.49 -0.32 2.88 16 23 H 0.09 1.86 8.05 -52.49 -0.42 1.43 16 24 H 0.09 2.12 8.05 -52.49 -0.42 1.70 16 25 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.34 3.85 9.04 -39.29 -0.36 3.50 16 30 H 0.33 3.63 9.01 -39.29 -0.35 3.27 16 31 H 0.05 0.85 8.12 -51.93 -0.42 0.42 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 263.10 15.07 3.96 3.96 Total: -1.00 -27.87 263.10 -8.86 -36.73 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.38 Total: 8.80 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -3.98 Total: -32.04 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.57 Total: -31.28 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.87 -8.86 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713807769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.999 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds