Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47251 * 300.00247 * 3 2 1 6 6 H 1.48501 * 109.46821 * 60.00092 * 3 2 1 7 7 C 1.39943 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99901 * 161.45614 * 7 2 1 9 9 C 1.41399 * 119.99769 * 341.46036 * 7 2 1 10 10 C 1.40740 * 120.37459 * 336.13260 * 9 7 2 11 11 C 1.37271 * 119.50187 * 180.23153 * 10 9 7 12 12 C 1.39374 * 120.90283 * 359.94540 * 11 10 9 13 13 C 1.38095 * 120.03337 * 359.79345 * 12 11 10 14 14 C 1.38322 * 119.92943 * 0.33715 * 13 12 11 15 15 C 1.50676 * 122.52338 * 180.43467 * 13 12 11 16 16 C 1.52707 * 110.61189 * 342.44838 * 15 13 12 17 17 C 1.53335 * 108.37139 * 51.08100 * 16 15 13 18 18 H 1.08996 * 109.68309 * 49.63062 * 17 16 15 19 19 N 1.46901 * 109.71340 * 170.17420 * 17 16 15 20 20 C 1.50728 * 117.51138 * 179.73153 * 12 11 10 21 21 H 0.97006 * 119.99663 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.25036 * 0.24863 * 10 9 7 23 23 H 1.08002 * 119.55084 * 179.97438 * 11 10 9 24 24 H 1.07999 * 119.82298 * 179.86098 * 14 13 12 25 25 H 1.09007 * 109.24684 * 222.15774 * 15 13 12 26 26 H 1.08994 * 109.24704 * 102.74297 * 15 13 12 27 27 H 1.08997 * 109.68835 * 291.36171 * 16 15 13 28 28 H 1.08997 * 109.68860 * 170.80291 * 16 15 13 29 29 H 1.00896 * 110.99706 * 178.93317 * 19 17 16 30 30 H 1.00900 * 110.99787 * 302.88135 * 19 17 16 31 31 H 1.09005 * 109.24802 * 42.02883 * 20 12 11 32 32 H 1.09001 * 109.25278 * 282.56280 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0459 -1.2363 -0.2969 9 6 1.3560 -2.4045 0.3904 10 6 0.2264 -2.3567 1.2287 11 6 -0.3898 -3.5258 1.6000 12 6 0.0872 -4.7583 1.1573 13 6 1.1915 -4.8154 0.3302 14 6 1.8280 -3.6486 -0.0528 15 6 1.7485 -6.1157 -0.1889 16 6 1.2328 -7.2903 0.6395 17 6 -0.2944 -7.1854 0.7284 18 1 -0.7106 -7.0356 -0.2678 19 7 -0.8424 -8.4164 1.3136 20 6 -0.6441 -5.9936 1.6168 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1528 -1.4074 1.5770 23 1 -1.2564 -3.4900 2.2436 24 1 2.6929 -3.6954 -0.6979 25 1 2.8368 -6.0877 -0.1342 26 1 1.4447 -6.2475 -1.2273 27 1 1.6623 -7.2503 1.6405 28 1 1.5090 -8.2284 0.1583 29 1 -1.8464 -8.3612 1.3971 30 1 -0.5682 -9.2253 0.7764 31 1 -1.7181 -5.8136 1.5702 32 1 -0.3613 -6.2169 2.6455 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713807769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -23.393164 kcal Electronic energy + Delta-G solvation = -14156.021524 eV Core-core repulsion = 11885.828401 eV Total energy + Delta-G solvation = -2270.193123 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39969 -37.68552 -35.38773 -33.60810 -32.50150 -29.82288 -29.46129 -26.38286 -24.03543 -22.68131 -22.33312 -20.30661 -18.73641 -17.17427 -16.74758 -16.35575 -16.13423 -15.42230 -15.16952 -14.65050 -14.45360 -14.01725 -13.82446 -13.46184 -13.12253 -12.95902 -12.69295 -12.59238 -12.20590 -12.07994 -11.81005 -11.62808 -11.21150 -11.01151 -10.91295 -9.57524 -9.26789 -9.02516 -8.64082 -6.32659 0.95850 1.10308 1.36593 1.49229 1.52518 2.20166 2.69563 3.58507 3.69086 3.89923 4.03553 4.33932 4.42119 4.49042 4.60018 4.73626 4.79815 4.94780 5.02339 5.05055 5.12162 5.14410 5.19983 5.40950 5.44939 5.58352 5.71559 6.00445 6.12149 6.24180 6.32250 6.42221 6.69566 6.72221 6.95041 7.05208 8.33236 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.065041 B = 0.006983 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.392454 B = 4008.878556 C = 4330.967970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.073 0.927 9 C 0.075 3.925 10 C -0.187 4.187 11 C -0.112 4.112 12 C -0.199 4.199 13 C -0.057 4.057 14 C -0.249 4.249 15 C -0.071 4.071 16 C -0.098 4.098 17 C 0.098 3.902 18 H 0.030 0.970 19 N -0.846 5.846 20 C -0.043 4.043 21 H 0.287 0.713 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.347 0.653 30 H 0.351 0.649 31 H 0.057 0.943 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -9.394 0.419 9.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.073 3.927 10 C -0.206 4.206 11 C -0.131 4.131 12 C -0.200 4.200 13 C -0.057 4.057 14 C -0.268 4.268 15 C -0.109 4.109 16 C -0.136 4.136 17 C -0.013 4.013 18 H 0.048 0.952 19 N -0.377 5.377 20 C -0.081 4.081 21 H 0.098 0.902 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.075 0.925 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.325 -9.070 1.039 9.136 hybrid contribution -0.334 1.169 -0.968 1.554 sum -0.659 -7.902 0.071 7.930 Atomic orbital electron populations 1.69896 1.09090 1.30422 1.36132 1.26771 0.95464 1.04560 0.91150 0.85162 0.79394 0.76142 0.78995 1.18219 1.18923 1.18832 1.19819 0.98520 0.92729 1.42259 0.90909 1.17885 0.91967 0.93238 0.89584 1.21238 1.00257 0.96991 1.02151 1.20960 0.99191 0.92798 1.00109 1.19304 1.00193 0.94179 1.06332 1.19527 0.94832 0.94701 0.96684 1.21106 1.04820 0.92770 1.08149 1.20415 1.00127 0.91133 0.99210 1.21448 0.94385 0.97524 1.00215 1.21140 0.95365 0.89841 0.94965 0.95191 1.58666 1.16918 1.03880 1.58272 1.20083 0.98074 0.91014 0.98883 0.90209 0.88255 0.87834 0.88955 0.90836 0.91055 0.92199 0.89655 0.83968 0.83552 0.92457 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.92 10.97 21.83 0.24 -44.68 16 2 C 0.03 1.82 5.14 85.26 0.44 2.26 16 3 Si 0.98 39.37 29.60 68.60 2.03 41.40 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.50 -28.35 9.06 23.46 0.21 -28.14 16 8 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.08 4.27 5.56 -21.40 -0.12 4.15 16 10 C -0.19 -10.32 8.71 22.65 0.20 -10.13 16 11 C -0.11 -5.44 9.57 22.32 0.21 -5.23 16 12 C -0.20 -8.72 5.77 -19.62 -0.11 -8.83 16 13 C -0.06 -2.55 5.73 -19.89 -0.11 -2.66 16 14 C -0.25 -12.72 9.33 22.78 0.21 -12.51 16 15 C -0.07 -2.41 5.66 29.74 0.17 -2.24 16 16 C -0.10 -2.75 5.55 30.61 0.17 -2.58 16 17 C 0.10 2.78 3.27 44.93 0.15 2.93 16 18 H 0.03 0.89 8.10 -2.39 -0.02 0.87 16 19 N -0.85 -18.52 9.26 -168.62 -1.56 -20.08 16 20 C -0.04 -1.48 5.25 29.76 0.16 -1.32 16 21 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 22 H 0.10 5.72 6.16 -2.91 -0.02 5.70 16 23 H 0.10 4.50 8.05 -2.91 -0.02 4.48 16 24 H 0.09 4.50 8.05 -2.91 -0.02 4.48 16 25 H 0.07 2.34 8.12 -2.38 -0.02 2.32 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.35 6.63 9.04 -89.70 -0.81 5.82 16 30 H 0.35 6.04 9.01 -89.69 -0.81 5.24 16 31 H 0.06 1.87 8.12 -2.38 -0.02 1.85 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -61.75 263.10 1.79 -59.96 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.49 Total: 27.71 kcal Atomic # 6 Polarization: -65.88 SS G_CDS: 1.57 Total: -64.31 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -1.32 Total: -64.77 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -61.75 1.79 -59.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713807769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.568 kcal (2) G-P(sol) polarization free energy of solvation -61.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds