Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47458 * 2 1 4 4 C 1.50698 * 109.47003 * 120.00245 * 2 1 3 5 5 H 1.08001 * 120.00046 * 120.00185 * 4 2 1 6 6 C 1.37874 * 119.99904 * 299.99679 * 4 2 1 7 7 N 1.31515 * 120.00191 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47402 * 60.00506 * 8 6 4 10 10 H 1.48502 * 109.47084 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47448 * 300.00183 * 8 6 4 12 12 N 1.46906 * 109.47268 * 240.00326 * 2 1 3 13 13 C 1.48550 * 111.00101 * 185.41977 * 12 2 1 14 14 C 1.54378 * 104.59514 * 200.96003 * 13 12 2 15 15 H 1.09003 * 117.60139 * 244.71755 * 14 13 12 16 16 C 1.54444 * 105.07843 * 23.94904 * 14 13 12 17 17 H 1.09005 * 121.80249 * 222.95481 * 16 14 13 18 18 C 1.48560 * 110.99883 * 69.99646 * 12 2 1 19 19 C 1.52996 * 118.13343 * 89.19377 * 14 13 12 20 20 F 1.39904 * 117.44152 * 15.98134 * 19 14 13 21 21 F 1.39898 * 117.44833 * 160.72534 * 19 14 13 22 22 H 1.08998 * 109.47328 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47305 * 300.00245 * 1 2 3 24 24 H 1.09004 * 109.47057 * 60.00010 * 1 2 3 25 25 H 0.96996 * 120.00075 * 179.97438 * 7 6 4 26 26 H 1.09008 * 110.41398 * 319.73707 * 13 12 2 27 27 H 1.09000 * 110.41443 * 82.17889 * 13 12 2 28 28 H 1.09002 * 110.41441 * 277.82232 * 18 12 2 29 29 H 1.09002 * 110.41248 * 40.14533 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0078 9 1 3.8075 -1.1191 4.0077 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0197 -0.6924 -1.1995 13 6 3.4989 -0.8267 -1.1701 14 6 3.8987 -1.0487 -2.6446 15 1 4.3457 -2.0074 -2.9079 16 6 2.7482 -0.4321 -3.4701 17 1 2.3386 -0.9323 -4.3477 18 6 1.7499 0.1062 -2.4227 19 6 4.1916 0.1816 -3.5057 20 9 4.4158 1.3934 -2.8436 21 9 4.9338 -0.0121 -4.6757 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7082 1.1608 3.4844 26 1 3.9559 0.0851 -0.7855 27 1 3.7908 -1.6842 -0.5639 28 1 0.7249 -0.0488 -2.7596 29 1 1.9311 1.1643 -2.2336 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715398958.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = -53.354871 kcal Electronic energy + Delta-G solvation = -15030.452265 eV Core-core repulsion = 12204.730375 eV Total energy + Delta-G solvation = -2825.721890 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.44852 -47.15491 -38.91863 -34.62993 -32.05139 -28.74616 -28.22314 -25.04177 -23.54738 -20.94106 -20.19086 -19.55756 -17.62212 -16.58195 -16.09131 -15.64968 -15.41865 -14.35429 -13.89936 -13.55611 -13.31972 -13.30291 -13.13096 -12.29024 -12.21947 -11.64946 -11.23095 -11.18085 -10.89693 -10.81363 -10.53083 -10.22835 -10.09914 -9.87249 -9.49985 -8.92316 -8.49079 -7.49790 -6.06165 -4.12061 2.99195 3.23876 3.29869 3.34466 3.36934 4.35810 4.40315 4.52672 4.74881 5.12637 5.24644 5.28298 5.40014 5.76643 5.87266 6.17414 6.19970 6.41629 6.47549 6.76547 6.96033 7.00910 7.37460 7.46617 7.75656 8.01340 8.21954 8.42504 8.92771 9.53492 11.00639 Molecular weight = 217.10amu Principal moments of inertia in cm(-1) A = 0.046191 B = 0.008223 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.031034 B = 3404.324872 C = 3638.944656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.202 3.798 3 H 0.005 0.995 4 C -0.511 4.511 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.500 5.500 13 C 0.075 3.925 14 C -0.156 4.156 15 H 0.133 0.867 16 C -0.151 4.151 17 H 0.136 0.864 18 C 0.056 3.944 19 C 0.199 3.801 20 F -0.159 7.159 21 F -0.164 7.164 22 H 0.035 0.965 23 H 0.086 0.914 24 H 0.007 0.993 25 H 0.262 0.738 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -2.019 -9.667 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.096 3.904 3 H 0.022 0.978 4 C -0.549 4.549 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.226 5.226 13 C -0.053 4.053 14 C -0.176 4.176 15 H 0.151 0.849 16 C -0.170 4.170 17 H 0.154 0.846 18 C -0.072 4.072 19 C 0.162 3.838 20 F -0.139 7.139 21 F -0.144 7.144 22 H 0.054 0.946 23 H 0.105 0.895 24 H 0.026 0.974 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.228 -2.380 -9.501 10.313 hybrid contribution 0.901 0.525 0.714 1.264 sum 4.129 -1.855 -8.787 9.885 Atomic orbital electron populations 1.21760 0.97223 0.99761 0.99995 1.19486 0.92885 0.92271 0.85790 0.97768 1.21075 1.31547 1.12528 0.89750 0.91950 1.24929 0.95047 0.95003 0.99079 1.69876 1.36567 1.22879 1.23683 0.86558 0.79115 0.79746 0.81985 1.20274 1.21309 1.20164 1.65720 1.08995 1.44997 1.02849 1.22473 0.90388 1.02526 0.89926 1.24964 0.99932 0.95848 0.96810 0.84921 1.25461 0.88811 1.01134 1.01639 0.84598 1.22674 0.97725 0.96549 0.90234 1.21056 0.95622 0.83388 0.83745 1.93002 1.95233 1.45975 1.79686 1.92978 1.78319 1.94920 1.48186 0.94559 0.89546 0.97431 0.92805 0.92859 0.88775 0.89314 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.03 37.16 0.34 -2.77 15 2 C 0.20 5.00 1.88 -68.86 -0.13 4.87 15 3 H 0.00 0.13 7.88 -51.93 -0.41 -0.28 15 4 C -0.51 -13.66 8.03 -34.44 -0.28 -13.94 15 5 H 0.06 1.64 6.64 -52.49 -0.35 1.30 15 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 15 7 N -0.89 -25.06 11.32 55.43 0.63 -24.43 15 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 9 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 12 N -0.50 -10.48 5.19 -223.41 -1.16 -11.64 15 13 C 0.07 1.43 5.25 -2.19 -0.01 1.42 15 14 C -0.16 -2.39 6.98 -89.14 -0.62 -3.02 15 15 H 0.13 1.71 8.14 -51.93 -0.42 1.29 15 16 C -0.15 -2.24 7.28 -87.04 -0.63 -2.87 15 17 H 0.14 1.64 8.14 -51.93 -0.42 1.22 15 18 C 0.06 1.00 5.48 -2.18 -0.01 0.99 15 19 C 0.20 3.13 5.25 -24.63 -0.13 3.00 15 20 F -0.16 -2.83 16.44 2.25 0.04 -2.80 15 21 F -0.16 -2.46 17.60 2.25 0.04 -2.42 15 22 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.09 2.27 6.07 -51.93 -0.32 1.96 15 24 H 0.01 0.15 7.26 -51.93 -0.38 -0.23 15 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 26 H 0.05 1.11 7.46 -51.92 -0.39 0.72 15 27 H 0.09 1.79 7.21 -51.93 -0.37 1.41 15 28 H 0.09 1.46 7.77 -51.93 -0.40 1.05 15 29 H 0.05 0.90 7.52 -51.93 -0.39 0.51 15 LS Contribution 246.42 15.07 3.71 3.71 Total: -1.00 -27.82 246.42 -6.74 -34.57 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.41 Total: -2.17 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.57 Total: -10.75 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.53 Total: -36.08 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.08 Total: -5.22 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.82 -6.74 -34.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715398958.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.789 kcal (2) G-P(sol) polarization free energy of solvation -27.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds