Wall clock time and date at job start Mon Mar 30 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47458 * 2 1 4 4 C 1.50698 * 109.47003 * 120.00245 * 2 1 3 5 5 H 1.08001 * 120.00046 * 120.00185 * 4 2 1 6 6 C 1.37874 * 119.99904 * 299.99679 * 4 2 1 7 7 N 1.31515 * 120.00191 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47402 * 60.00506 * 8 6 4 10 10 H 1.48502 * 109.47084 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47448 * 300.00183 * 8 6 4 12 12 N 1.46906 * 109.47268 * 240.00326 * 2 1 3 13 13 C 1.48550 * 111.00101 * 185.41977 * 12 2 1 14 14 C 1.54378 * 104.59514 * 200.96003 * 13 12 2 15 15 H 1.09003 * 117.60139 * 244.71755 * 14 13 12 16 16 C 1.54444 * 105.07843 * 23.94904 * 14 13 12 17 17 H 1.09005 * 121.80249 * 222.95481 * 16 14 13 18 18 C 1.48560 * 110.99883 * 69.99646 * 12 2 1 19 19 C 1.52996 * 118.13343 * 89.19377 * 14 13 12 20 20 F 1.39904 * 117.44152 * 15.98134 * 19 14 13 21 21 F 1.39898 * 117.44833 * 160.72534 * 19 14 13 22 22 H 1.08998 * 109.47328 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47305 * 300.00245 * 1 2 3 24 24 H 1.09004 * 109.47057 * 60.00010 * 1 2 3 25 25 H 0.96996 * 120.00075 * 179.97438 * 7 6 4 26 26 H 1.09008 * 110.41398 * 319.73707 * 13 12 2 27 27 H 1.09000 * 110.41443 * 82.17889 * 13 12 2 28 28 H 1.09002 * 110.41441 * 277.82232 * 18 12 2 29 29 H 1.09002 * 110.41248 * 40.14533 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0078 9 1 3.8075 -1.1191 4.0077 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0197 -0.6924 -1.1995 13 6 3.4989 -0.8267 -1.1701 14 6 3.8987 -1.0487 -2.6446 15 1 4.3457 -2.0074 -2.9079 16 6 2.7482 -0.4321 -3.4701 17 1 2.3386 -0.9323 -4.3477 18 6 1.7499 0.1062 -2.4227 19 6 4.1916 0.1816 -3.5057 20 9 4.4158 1.3934 -2.8436 21 9 4.9338 -0.0121 -4.6757 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7082 1.1608 3.4844 26 1 3.9559 0.0851 -0.7855 27 1 3.7908 -1.6842 -0.5639 28 1 0.7249 -0.0488 -2.7596 29 1 1.9311 1.1643 -2.2336 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715398958.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:17 Heat of formation + Delta-G solvation = -70.732070 kcal Electronic energy + Delta-G solvation = -15031.205797 eV Core-core repulsion = 12204.730375 eV Total energy + Delta-G solvation = -2826.475422 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.71229 -48.43138 -40.39559 -36.39352 -33.91398 -30.53462 -29.72949 -27.04928 -25.10392 -22.36864 -21.60791 -21.25519 -18.89846 -18.31576 -17.69447 -17.11851 -16.94462 -16.13471 -15.26668 -15.09725 -14.86292 -14.77077 -14.60580 -14.03895 -13.74725 -13.27561 -13.02731 -12.75807 -12.72896 -12.48710 -12.22744 -12.09783 -11.90528 -11.50315 -10.92632 -10.73953 -10.54162 -9.24196 -8.12949 -6.25804 1.43732 1.45189 1.52589 1.74629 1.99169 2.42155 3.13794 3.14762 3.21067 3.38087 3.67113 3.99016 4.13846 4.41625 4.52495 4.73773 4.80748 4.90034 4.92128 5.00861 5.03310 5.15990 5.42954 5.63244 5.69208 6.12079 6.24934 6.50657 6.86372 7.43716 8.93113 Molecular weight = 217.10amu Principal moments of inertia in cm(-1) A = 0.046191 B = 0.008223 C = 0.007693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.031034 B = 3404.324872 C = 3638.944656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.206 3.794 3 H -0.035 1.035 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.269 1.269 12 N -0.505 5.505 13 C 0.071 3.929 14 C -0.147 4.147 15 H 0.168 0.832 16 C -0.130 4.130 17 H 0.178 0.822 18 C 0.050 3.950 19 C 0.192 3.808 20 F -0.177 7.177 21 F -0.156 7.156 22 H 0.035 0.965 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.262 0.738 26 H 0.025 0.975 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 -3.511 -10.823 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 H -0.018 1.018 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.229 5.229 13 C -0.057 4.057 14 C -0.166 4.166 15 H 0.185 0.815 16 C -0.149 4.149 17 H 0.195 0.805 18 C -0.078 4.078 19 C 0.155 3.845 20 F -0.158 7.158 21 F -0.136 7.136 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.557 -3.880 -10.678 11.904 hybrid contribution 0.814 1.032 1.036 1.673 sum 4.370 -2.848 -9.642 10.962 Atomic orbital electron populations 1.21578 0.96699 0.99551 0.99824 1.19265 0.93295 0.90270 0.87260 1.01752 1.21393 1.31528 1.12582 0.90853 0.91942 1.25730 0.95245 0.95688 1.02027 1.70012 1.37571 1.24137 1.24221 0.85560 0.78682 0.78774 0.78326 1.19707 1.21123 1.19395 1.65644 1.10118 1.44674 1.02485 1.22421 0.89315 1.01131 0.92867 1.24914 1.00557 0.97149 0.94010 0.81459 1.25524 0.87496 0.99994 1.01922 0.80511 1.22752 0.99794 0.95313 0.89898 1.21154 0.96571 0.82784 0.84025 1.92969 1.95413 1.47207 1.80207 1.92995 1.78226 1.94797 1.47593 0.94548 0.92172 0.95145 0.92875 0.95631 0.88941 0.87515 0.95294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 9.03 71.98 0.65 -5.06 15 2 C 0.21 10.41 1.88 44.17 0.08 10.49 15 3 H -0.03 -2.00 7.88 -2.39 -0.02 -2.02 15 4 C -0.53 -28.44 8.03 25.60 0.21 -28.23 15 5 H 0.06 3.30 6.64 -2.91 -0.02 3.28 15 6 C 0.01 0.66 5.30 84.65 0.45 1.11 15 7 N -0.92 -52.77 11.32 21.45 0.24 -52.53 15 8 Si 0.96 43.10 29.54 68.60 2.03 45.12 15 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 12 N -0.50 -20.83 5.19 -860.73 -4.47 -25.30 15 13 C 0.07 2.66 5.25 86.45 0.45 3.11 15 14 C -0.15 -4.12 6.98 -9.84 -0.07 -4.19 15 15 H 0.17 3.58 8.14 -2.39 -0.02 3.56 15 16 C -0.13 -3.44 7.28 -8.47 -0.06 -3.50 15 17 H 0.18 3.32 8.14 -2.38 -0.02 3.30 15 18 C 0.05 1.71 5.48 86.45 0.47 2.18 15 19 C 0.19 5.60 5.25 31.96 0.17 5.77 15 20 F -0.18 -6.29 16.44 44.97 0.74 -5.55 15 21 F -0.16 -4.23 17.60 44.97 0.79 -3.44 15 22 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.06 3.22 6.07 -2.39 -0.01 3.21 15 24 H 0.03 1.27 7.26 -2.38 -0.02 1.25 15 25 H 0.26 14.34 8.31 -92.71 -0.77 13.57 15 26 H 0.03 1.09 7.46 -2.38 -0.02 1.08 15 27 H 0.09 3.46 7.21 -2.39 -0.02 3.44 15 28 H 0.11 3.23 7.77 -2.39 -0.02 3.22 15 29 H 0.03 1.10 7.52 -2.39 -0.02 1.08 15 Total: -1.00 -60.25 246.42 2.83 -57.42 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.15 Total: 2.59 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 2.35 Total: -18.31 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -4.23 Total: -77.82 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 1.53 Total: -8.99 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -60.25 2.83 -57.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715398958.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.312 kcal (2) G-P(sol) polarization free energy of solvation -60.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds