Wall clock time and date at job start Mon Mar 30 2020 03:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47023 * 2 1 4 4 C 1.50708 * 109.46917 * 239.99734 * 2 1 3 5 5 H 1.08000 * 119.99895 * 239.99997 * 4 2 1 6 6 C 1.37871 * 120.00082 * 60.00281 * 4 2 1 7 7 N 1.31515 * 119.99969 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00051 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47210 * 59.99907 * 8 6 4 10 10 H 1.48501 * 109.47202 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47145 * 299.99668 * 8 6 4 12 12 N 1.46905 * 109.46912 * 119.99958 * 2 1 3 13 13 C 1.48559 * 110.99634 * 294.99811 * 12 2 1 14 14 C 1.54387 * 104.58955 * 200.96175 * 13 12 2 15 15 H 1.08998 * 117.60186 * 244.71542 * 14 13 12 16 16 C 1.54262 * 105.05947 * 23.85673 * 14 13 12 17 17 H 1.09002 * 121.77895 * 222.12051 * 16 14 13 18 18 C 1.48566 * 110.99489 * 179.58189 * 12 2 1 19 19 C 1.53004 * 118.12607 * 89.19865 * 14 13 12 20 20 F 1.39896 * 117.44492 * 15.98024 * 19 14 13 21 21 F 1.39897 * 117.44076 * 160.68206 * 19 14 13 22 22 H 1.09004 * 109.47205 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47358 * 299.99951 * 1 2 3 24 24 H 1.09001 * 109.47536 * 60.00341 * 1 2 3 25 25 H 0.96998 * 120.00394 * 180.02562 * 7 6 4 26 26 H 1.08999 * 110.40971 * 82.18709 * 13 12 2 27 27 H 1.08999 * 110.41180 * 319.73915 * 13 12 2 28 28 H 1.08992 * 110.41437 * 40.25870 * 18 12 2 29 29 H 1.09001 * 110.51125 * 277.86668 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.8280 -2.5200 -4.0081 10 1 1.8279 -0.4194 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 7 2.0196 -0.6925 1.1995 13 6 1.6444 0.0475 2.4318 14 6 2.6363 -0.4537 3.5035 15 1 2.2290 -1.0095 4.3480 16 6 3.8600 -0.9592 2.7120 17 1 4.3724 -1.8843 2.9762 18 6 3.5047 -0.7211 1.2287 19 6 3.9653 0.2883 3.6596 20 9 4.0667 1.5579 3.0810 21 9 4.6625 0.1163 4.8602 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7081 1.1607 -3.4844 26 1 0.6206 -0.1897 2.7208 27 1 1.7587 1.1209 2.2803 28 1 3.9100 0.2319 0.8890 29 1 3.8833 -1.5359 0.6116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715398961.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:20 Heat of formation + Delta-G solvation = -70.856260 kcal Electronic energy + Delta-G solvation = -15021.604419 eV Core-core repulsion = 12195.123611 eV Total energy + Delta-G solvation = -2826.480807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.71400 -48.43246 -40.40564 -36.39663 -33.91890 -30.56898 -29.67444 -27.05925 -25.12393 -22.36030 -21.64607 -21.19514 -18.89382 -18.36934 -17.67710 -17.12740 -16.92588 -16.14309 -15.26500 -15.10971 -14.84275 -14.80017 -14.60730 -14.03162 -13.74516 -13.29760 -13.01359 -12.76703 -12.69926 -12.49965 -12.25189 -12.08481 -11.90690 -11.51437 -10.93567 -10.75011 -10.52929 -9.24137 -8.12422 -6.25239 1.44276 1.45741 1.53232 1.76433 1.96587 2.42740 3.14265 3.14708 3.21231 3.37785 3.67126 3.97966 4.13042 4.42022 4.51163 4.73967 4.80238 4.88670 4.91733 4.99306 5.02436 5.14334 5.42125 5.63382 5.69034 6.12985 6.24792 6.50692 6.86779 7.44268 8.93646 Molecular weight = 217.10amu Principal moments of inertia in cm(-1) A = 0.048296 B = 0.008051 C = 0.007605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.619191 B = 3476.995603 C = 3680.682966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.207 3.793 3 H -0.036 1.036 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.504 5.504 13 C 0.051 3.949 14 C -0.138 4.138 15 H 0.172 0.828 16 C -0.137 4.137 17 H 0.173 0.827 18 C 0.069 3.931 19 C 0.189 3.811 20 F -0.177 7.177 21 F -0.156 7.156 22 H 0.036 0.964 23 H 0.030 0.970 24 H 0.060 0.940 25 H 0.262 0.738 26 H 0.105 0.895 27 H 0.029 0.971 28 H 0.025 0.975 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.884 -3.523 10.833 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.099 3.901 3 H -0.018 1.018 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.229 5.229 13 C -0.077 4.077 14 C -0.157 4.157 15 H 0.190 0.810 16 C -0.157 4.157 17 H 0.190 0.810 18 C -0.059 4.059 19 C 0.153 3.847 20 F -0.158 7.158 21 F -0.136 7.136 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.570 -3.905 10.670 11.909 hybrid contribution 0.655 1.114 -0.919 1.586 sum 4.224 -2.791 9.750 10.987 Atomic orbital electron populations 1.21609 0.96763 0.99590 0.99887 1.19259 0.93220 0.90218 0.87359 1.01809 1.21354 1.31461 1.12507 0.90767 0.91996 1.25733 0.95269 0.95695 1.02036 1.70013 1.37628 1.24174 1.24217 0.85548 0.78704 0.78741 0.78276 1.19415 1.21166 1.19661 1.65655 1.07625 1.47580 1.02035 1.22731 0.99638 0.95865 0.89431 1.24837 0.89414 0.99824 1.01613 0.81041 1.25563 1.00888 0.96416 0.92812 0.80967 1.22437 0.89614 1.00891 0.92944 1.21173 0.99903 0.80066 0.83598 1.92964 1.96772 1.42047 1.83997 1.92995 1.80400 1.95049 1.45159 0.94491 0.95136 0.92135 0.92887 0.87688 0.95241 0.95658 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.94 71.98 0.64 -5.16 15 2 C 0.21 10.43 1.83 44.17 0.08 10.51 15 3 H -0.04 -2.04 7.97 -2.39 -0.02 -2.06 15 4 C -0.52 -28.28 8.09 25.60 0.21 -28.08 15 5 H 0.06 3.27 6.93 -2.91 -0.02 3.25 15 6 C 0.01 0.63 5.30 84.65 0.45 1.08 15 7 N -0.92 -52.83 11.32 21.45 0.24 -52.58 15 8 Si 0.96 43.06 29.54 68.60 2.03 45.08 15 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 15 12 N -0.50 -20.82 5.19 -860.70 -4.47 -25.28 15 13 C 0.05 1.75 5.26 86.45 0.45 2.20 15 14 C -0.14 -3.66 6.97 -9.89 -0.07 -3.73 15 15 H 0.17 3.31 8.14 -2.39 -0.02 3.29 15 16 C -0.14 -3.81 7.28 -8.49 -0.06 -3.87 15 17 H 0.17 3.57 8.14 -2.39 -0.02 3.56 15 18 C 0.07 2.57 5.42 86.45 0.47 3.04 15 19 C 0.19 5.51 5.26 32.00 0.17 5.68 15 20 F -0.18 -6.24 16.44 44.97 0.74 -5.50 15 21 F -0.16 -4.21 17.60 44.97 0.79 -3.42 15 22 H 0.04 1.73 8.14 -2.38 -0.02 1.71 15 23 H 0.03 1.28 7.08 -2.39 -0.02 1.26 15 24 H 0.06 3.25 6.07 -2.39 -0.01 3.23 15 25 H 0.26 14.34 8.31 -92.71 -0.77 13.57 15 26 H 0.10 3.23 7.70 -2.39 -0.02 3.21 15 27 H 0.03 1.12 7.36 -2.39 -0.02 1.10 15 28 H 0.03 1.07 7.67 -2.39 -0.02 1.05 15 29 H 0.09 3.49 7.41 -2.39 -0.02 3.47 15 Total: -1.00 -60.21 246.67 2.82 -57.39 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.15 Total: 2.64 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 2.34 Total: -18.33 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -4.22 Total: -77.87 kcal Atomic # 9 Polarization: -10.45 SS G_CDS: 1.53 Total: -8.92 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -60.21 2.82 -57.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715398961.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.470 kcal (2) G-P(sol) polarization free energy of solvation -60.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds