Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31515 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47398 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46974 * 120.00544 * 8 6 4 11 11 H 1.48508 * 109.47010 * 240.00184 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.39232 * 119.99887 * 85.27880 * 12 2 1 14 14 C 1.39462 * 120.38661 * 179.44470 * 13 12 2 15 15 C 1.38193 * 118.44742 * 179.77672 * 14 13 12 16 16 C 1.39628 * 119.14551 * 0.49564 * 15 14 13 17 17 C 1.43192 * 119.65242 * 179.76869 * 16 15 14 18 18 N 7.49274 * 98.35743 * 292.29406 * 2 1 3 19 19 N 1.32873 * 120.69532 * 359.74623 * 16 15 14 20 20 C 1.31420 * 121.69500 * 359.97438 * 19 16 15 21 21 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 22 22 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 23 23 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99952 * 179.97438 * 7 6 4 25 25 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 26 26 H 1.07997 * 120.77694 * 0.02562 * 14 13 12 27 27 H 1.08000 * 120.42610 * 180.23971 * 15 14 13 28 28 H 1.08002 * 119.60795 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1483 -2.2855 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5865 4.8166 12 7 2.0184 -0.6906 -1.1961 13 6 2.1569 0.0053 -2.3940 14 6 2.6320 -0.6413 -3.5347 15 6 2.7492 0.0867 -4.7034 16 6 2.4003 1.4387 -4.7003 17 6 2.5222 2.2046 -5.9040 18 7 2.6190 2.8123 -6.8590 19 7 1.9559 2.0220 -3.5922 20 6 1.8274 1.3572 -2.4659 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7081 1.1610 3.4844 25 1 2.2491 -1.6318 -1.1525 26 1 2.8982 -1.6876 -3.5063 27 1 3.1100 -0.3830 -5.6065 28 1 1.4632 1.8651 -1.5851 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757132438.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = 45.202813 kcal Electronic energy + Delta-G solvation = -13432.249720 eV Core-core repulsion = 11061.490798 eV Total energy + Delta-G solvation = -2370.758922 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22975 -38.14540 -37.15845 -34.90046 -33.24808 -31.79985 -29.55899 -27.29961 -25.02051 -24.57487 -22.11330 -20.30807 -19.13982 -17.60150 -17.42427 -16.51658 -15.94735 -15.62969 -15.25061 -14.85450 -14.34380 -14.19957 -14.04051 -13.68329 -13.61607 -13.45268 -13.02165 -12.87503 -12.52413 -12.24428 -12.04242 -11.50015 -11.02843 -10.61490 -10.52767 -10.43073 -8.37001 -8.16234 -6.31963 -0.02071 0.40985 1.44500 1.48361 1.57312 1.58725 1.96068 2.37138 2.65226 2.87858 3.08342 3.15116 3.85003 3.97762 4.19663 4.32037 4.73571 4.76075 4.98777 5.03372 5.11468 5.21667 5.39194 5.57664 5.69237 5.88259 6.10073 6.38477 6.44873 6.74083 6.91474 7.12140 7.39919 8.87983 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.064730 B = 0.005929 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.462533 B = 4721.166907 C = 4899.531331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.267 3.733 3 H 0.021 0.979 4 C -0.545 4.545 5 H 0.068 0.932 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.961 3.039 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.282 1.282 12 N -0.697 5.697 13 C 0.209 3.791 14 C -0.167 4.167 15 C -0.041 4.041 16 C 0.065 3.935 17 C 0.304 3.696 18 N -0.459 5.459 19 N -0.432 5.432 20 C 0.012 3.988 21 H 0.067 0.933 22 H 0.027 0.973 23 H 0.034 0.966 24 H 0.265 0.735 25 H 0.407 0.593 26 H 0.174 0.826 27 H 0.177 0.823 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -6.299 -7.441 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.039 0.961 4 C -0.583 4.583 5 H 0.086 0.914 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.787 3.213 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.208 1.208 12 N -0.317 5.317 13 C 0.093 3.907 14 C -0.197 4.197 15 C -0.064 4.064 16 C -0.075 4.075 17 C -0.011 4.011 18 N -0.138 5.138 19 N -0.142 5.142 20 C -0.157 4.157 21 H 0.086 0.914 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.243 0.757 26 H 0.192 0.808 27 H 0.194 0.806 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.419 -4.291 -8.576 9.890 hybrid contribution 0.250 -1.314 1.631 2.109 sum 2.669 -5.606 -6.945 9.316 Atomic orbital electron populations 1.22032 0.98154 0.99729 1.00306 1.18575 0.91069 0.92556 0.81461 0.96081 1.21534 1.32283 1.13542 0.90964 0.91390 1.25609 0.94958 0.95574 1.01853 1.69989 1.36800 1.23656 1.24538 0.85452 0.78016 0.78610 0.79188 1.18816 1.21147 1.20824 1.45355 1.66707 1.12765 1.06886 1.19439 0.90563 0.92659 0.88059 1.21285 1.05797 1.02399 0.90217 1.21926 0.93771 0.90983 0.99751 1.16180 1.12025 0.91534 0.87727 1.25177 0.91968 0.91997 0.91935 1.81192 1.11276 1.08535 1.12752 1.67162 1.09043 1.39480 0.98467 1.22234 1.06696 0.91301 0.95431 0.91442 0.95355 0.94673 0.92558 0.75717 0.80829 0.80611 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.11 9.21 71.98 0.66 -5.45 15 2 C 0.27 11.44 2.25 44.25 0.10 11.54 15 3 H 0.02 1.03 6.49 -2.39 -0.02 1.01 15 4 C -0.54 -25.80 8.73 25.60 0.22 -25.58 15 5 H 0.07 3.08 7.74 -2.91 -0.02 3.06 15 6 C 0.02 1.02 5.30 84.65 0.45 1.47 15 7 N -0.91 -47.61 11.32 21.45 0.24 -47.36 15 8 Si 0.96 39.40 29.54 68.60 2.03 41.42 15 9 H -0.26 -10.35 7.11 99.48 0.71 -9.65 15 10 H -0.29 -11.78 7.11 99.48 0.71 -11.07 15 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 15 12 N -0.70 -23.23 5.23 -322.06 -1.68 -24.92 15 13 C 0.21 6.29 6.66 38.52 0.26 6.55 15 14 C -0.17 -3.66 10.03 22.55 0.23 -3.44 15 15 C -0.04 -0.87 9.78 22.60 0.22 -0.65 15 16 C 0.06 1.83 6.59 40.57 0.27 2.10 15 17 C 0.30 9.02 15.53 88.33 1.37 10.39 15 18 N -0.46 -14.84 18.54 19.00 0.35 -14.49 15 19 N -0.43 -14.62 10.26 -188.46 -1.93 -16.55 15 20 C 0.01 0.41 10.04 85.02 0.85 1.26 15 21 H 0.07 3.26 6.07 -2.39 -0.01 3.25 15 22 H 0.03 1.09 7.74 -2.39 -0.02 1.07 15 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.27 13.27 8.31 -92.71 -0.77 12.50 15 25 H 0.41 11.82 8.56 -92.71 -0.79 11.02 15 26 H 0.17 2.57 8.06 -2.91 -0.02 2.55 15 27 H 0.18 2.27 8.06 -2.91 -0.02 2.25 15 28 H 0.15 5.56 6.13 -2.91 -0.02 5.54 15 Total: -1.00 -55.60 255.62 4.04 -51.56 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.40 Total: 12.14 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 4.63 Total: -1.80 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.02 Total: -103.32 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.42 kcal Total: -55.60 4.04 -51.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757132438.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.763 kcal (2) G-P(sol) polarization free energy of solvation -55.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds