Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99622 * 2 1 4 4 H 1.48494 * 109.47332 * 240.00137 * 3 2 1 5 5 H 1.48499 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46806 * 120.00317 * 3 2 1 7 7 C 1.37875 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00421 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99716 * 359.97438 * 7 2 1 10 10 O 1.42900 * 113.25658 * 47.05233 * 9 7 2 11 11 C 1.53512 * 114.16934 * 180.02562 * 9 7 2 12 12 N 1.47483 * 87.93165 * 139.86281 * 11 9 7 13 13 C 1.46898 * 110.99979 * 221.29395 * 12 11 9 14 14 C 1.52997 * 109.47377 * 169.99929 * 13 12 11 15 15 H 1.09004 * 109.46881 * 59.99843 * 14 13 12 16 16 O 1.42904 * 109.47100 * 300.00760 * 14 13 12 17 17 C 1.52997 * 109.47504 * 180.02562 * 14 13 12 18 18 O 1.42898 * 109.47319 * 185.00258 * 17 14 13 19 19 C 1.47478 * 87.83788 * 332.99024 * 12 11 9 20 20 H 0.96998 * 120.00722 * 359.97438 * 1 2 3 21 21 H 0.96701 * 114.00031 * 312.95567 * 10 9 7 22 22 H 1.08996 * 113.48071 * 25.09399 * 11 9 7 23 23 H 1.09001 * 113.47709 * 254.62848 * 11 9 7 24 24 H 1.09004 * 109.47243 * 49.99994 * 13 12 11 25 25 H 1.09002 * 109.47426 * 290.00142 * 13 12 11 26 26 H 0.96708 * 113.99258 * 299.99573 * 16 14 13 27 27 H 1.09002 * 109.47153 * 64.99951 * 17 14 13 28 28 H 1.09001 * 109.46832 * 305.00142 * 17 14 13 29 29 H 0.96701 * 113.99881 * 180.02562 * 18 17 14 30 30 H 1.08998 * 113.47864 * 141.77599 * 19 12 11 31 31 H 1.08999 * 113.47257 * 272.24569 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.1940 -2.5403 -0.9611 11 6 2.1499 -3.7437 -0.0005 12 7 1.2052 -4.3602 0.9495 13 6 1.9208 -5.0901 2.0045 14 6 0.9343 -5.5010 3.0995 15 1 0.1638 -6.1428 2.6721 16 8 0.3269 -4.3334 3.6560 17 6 1.6797 -6.2608 4.1986 18 8 0.7425 -6.7451 5.1625 19 6 0.8518 -2.9993 1.3948 20 1 -0.4851 0.8400 0.0004 21 1 -0.3705 -1.7552 -0.9587 22 1 3.1381 -3.5657 0.4234 23 1 2.1892 -4.2509 -0.9646 24 1 2.6913 -4.4484 2.4319 25 1 2.3841 -5.9808 1.5800 26 1 0.9549 -3.7155 4.0549 27 1 2.3890 -5.5917 4.6858 28 1 2.2163 -7.1016 3.7592 29 1 1.1459 -7.2375 5.8904 30 1 -0.2088 -2.8757 1.6133 31 1 1.4937 -2.6227 2.1912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459994542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = -110.751309 kcal Electronic energy + Delta-G solvation = -15338.792516 eV Core-core repulsion = 12621.669245 eV Total energy + Delta-G solvation = -2717.123271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45580 -37.60441 -35.68152 -34.07510 -32.02536 -30.80212 -27.67973 -25.45433 -24.79830 -22.52771 -21.11495 -18.58830 -17.55223 -17.11624 -16.20341 -15.98121 -15.18294 -14.90480 -14.27545 -13.93802 -13.71582 -13.27168 -12.88776 -12.28900 -12.04728 -11.92110 -11.41260 -11.11366 -10.85994 -10.74458 -10.56362 -10.38337 -10.17218 -9.97836 -9.55983 -9.22887 -8.62395 -8.14551 -7.82769 -6.24291 -4.34552 3.21155 3.27194 3.28976 3.96433 4.26374 4.65802 4.87607 4.99249 5.11622 5.22252 5.37010 5.38073 5.54728 5.83252 6.00214 6.02001 6.29166 6.36765 6.45139 6.72181 7.14413 7.26238 7.38779 7.51859 7.78899 7.94214 7.98224 8.06730 8.66958 9.35285 9.73153 10.81644 Molecular weight = 217.11amu Principal moments of inertia in cm(-1) A = 0.044675 B = 0.007485 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.597328 B = 3739.877910 C = 3921.992938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.242 3.758 10 O -0.571 6.571 11 C 0.001 3.999 12 N -0.466 5.466 13 C -0.011 4.011 14 C 0.115 3.885 15 H 0.107 0.893 16 O -0.542 6.542 17 C 0.045 3.955 18 O -0.563 6.563 19 C -0.003 4.003 20 H 0.272 0.728 21 H 0.390 0.610 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.367 0.633 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.374 0.626 30 H 0.074 0.926 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 -7.817 7.260 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.201 3.799 10 O -0.383 6.383 11 C -0.128 4.128 12 N -0.188 5.188 13 C -0.141 4.141 14 C 0.055 3.945 15 H 0.125 0.875 16 O -0.346 6.346 17 C -0.034 4.034 18 O -0.368 6.368 19 C -0.132 4.132 20 H 0.083 0.917 21 H 0.246 0.754 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.214 0.786 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.220 0.780 30 H 0.092 0.908 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.761 -8.753 6.285 11.413 hybrid contribution 1.999 1.741 1.197 2.909 sum 5.760 -7.011 7.482 11.761 Atomic orbital electron populations 1.69290 1.06097 1.27940 1.50337 1.25063 0.94971 0.99629 0.93435 0.86462 0.79531 0.82116 0.78758 1.19970 1.20964 1.20128 1.21528 0.93528 0.90629 1.51775 0.91753 1.19442 0.85120 0.90443 0.84926 1.86020 1.45219 1.48121 1.58968 1.24115 0.95200 0.96712 0.96731 1.68925 1.26084 1.14536 1.09290 1.23217 0.95740 1.00187 0.94914 1.21857 0.95862 0.86844 0.89926 0.87486 1.86714 1.37409 1.32446 1.78049 1.22978 0.91626 0.97719 0.91028 1.86588 1.36394 1.75547 1.38235 1.24530 1.01277 0.86715 1.00661 0.91732 0.75419 0.92024 0.91143 0.94365 0.90741 0.78631 0.93578 0.92961 0.78021 0.90775 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 11.02 55.43 0.61 -23.79 16 2 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -14.39 8.69 -34.44 -0.30 -14.69 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.24 6.27 1.56 -91.24 -0.14 6.13 16 10 O -0.57 -15.96 13.53 -35.23 -0.48 -16.44 16 11 C 0.00 0.03 7.12 -7.54 -0.05 -0.03 16 12 N -0.47 -9.93 6.41 -244.61 -1.57 -11.50 16 13 C -0.01 -0.18 4.67 -3.83 -0.02 -0.20 16 14 C 0.11 1.80 3.52 -26.73 -0.09 1.71 16 15 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 16 O -0.54 -9.62 11.22 -40.10 -0.45 -10.07 16 17 C 0.05 0.54 6.68 37.16 0.25 0.79 16 18 O -0.56 -7.10 13.62 -40.10 -0.55 -7.65 16 19 C 0.00 -0.06 5.21 -7.54 -0.04 -0.10 16 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 21 H 0.39 11.06 6.33 45.56 0.29 11.35 16 22 H 0.06 1.26 7.73 -51.93 -0.40 0.86 16 23 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 24 H 0.04 0.60 7.56 -51.93 -0.39 0.21 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.37 5.41 8.56 45.56 0.39 5.80 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.37 2.69 9.12 45.56 0.42 3.11 16 30 H 0.07 1.92 8.03 -51.93 -0.42 1.50 16 31 H 0.05 1.19 7.12 -51.93 -0.37 0.82 16 LS Contribution 260.80 15.07 3.93 3.93 Total: -1.00 -31.06 260.80 -6.16 -37.22 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -2.15 Total: 17.54 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.50 Total: -4.60 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: -0.96 Total: -35.29 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.47 Total: -34.16 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.06 -6.16 -37.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459994542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.527 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds