Wall clock time and date at job start Mon Mar 30 2020 03:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99622 * 2 1 4 4 H 1.48494 * 109.47332 * 240.00137 * 3 2 1 5 5 H 1.48499 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46806 * 120.00317 * 3 2 1 7 7 C 1.37875 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00421 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99716 * 359.97438 * 7 2 1 10 10 O 1.42900 * 113.25658 * 47.05233 * 9 7 2 11 11 C 1.53512 * 114.16934 * 180.02562 * 9 7 2 12 12 N 1.47483 * 87.93165 * 139.86281 * 11 9 7 13 13 C 1.46898 * 110.99979 * 221.29395 * 12 11 9 14 14 C 1.52997 * 109.47377 * 169.99929 * 13 12 11 15 15 H 1.09004 * 109.46881 * 59.99843 * 14 13 12 16 16 O 1.42904 * 109.47100 * 300.00760 * 14 13 12 17 17 C 1.52997 * 109.47504 * 180.02562 * 14 13 12 18 18 O 1.42898 * 109.47319 * 185.00258 * 17 14 13 19 19 C 1.47478 * 87.83788 * 332.99024 * 12 11 9 20 20 H 0.96998 * 120.00722 * 359.97438 * 1 2 3 21 21 H 0.96701 * 114.00031 * 312.95567 * 10 9 7 22 22 H 1.08996 * 113.48071 * 25.09399 * 11 9 7 23 23 H 1.09001 * 113.47709 * 254.62848 * 11 9 7 24 24 H 1.09004 * 109.47243 * 49.99994 * 13 12 11 25 25 H 1.09002 * 109.47426 * 290.00142 * 13 12 11 26 26 H 0.96708 * 113.99258 * 299.99573 * 16 14 13 27 27 H 1.09002 * 109.47153 * 64.99951 * 17 14 13 28 28 H 1.09001 * 109.46832 * 305.00142 * 17 14 13 29 29 H 0.96701 * 113.99881 * 180.02562 * 18 17 14 30 30 H 1.08998 * 113.47864 * 141.77599 * 19 12 11 31 31 H 1.08999 * 113.47257 * 272.24569 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 8 0.1940 -2.5403 -0.9611 11 6 2.1499 -3.7437 -0.0005 12 7 1.2052 -4.3602 0.9495 13 6 1.9208 -5.0901 2.0045 14 6 0.9343 -5.5010 3.0995 15 1 0.1638 -6.1428 2.6721 16 8 0.3269 -4.3334 3.6560 17 6 1.6797 -6.2608 4.1986 18 8 0.7425 -6.7451 5.1625 19 6 0.8518 -2.9993 1.3948 20 1 -0.4851 0.8400 0.0004 21 1 -0.3705 -1.7552 -0.9587 22 1 3.1381 -3.5657 0.4234 23 1 2.1892 -4.2509 -0.9646 24 1 2.6913 -4.4484 2.4319 25 1 2.3841 -5.9808 1.5800 26 1 0.9549 -3.7155 4.0549 27 1 2.3890 -5.5917 4.6858 28 1 2.2163 -7.1016 3.7592 29 1 1.1459 -7.2375 5.8904 30 1 -0.2088 -2.8757 1.6133 31 1 1.4937 -2.6227 2.1912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459994542.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:38 Heat of formation + Delta-G solvation = -141.869456 kcal Electronic energy + Delta-G solvation = -15340.141900 eV Core-core repulsion = 12621.669245 eV Total energy + Delta-G solvation = -2718.472655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12806 -38.85348 -36.86117 -35.94631 -34.08500 -32.20061 -29.30033 -27.10388 -26.61081 -24.02142 -22.44240 -20.48245 -19.30605 -18.28347 -17.49713 -17.23877 -17.10991 -16.59934 -15.86092 -15.62755 -15.20385 -14.65576 -14.22740 -13.87931 -13.68053 -13.49032 -13.32389 -12.82576 -12.63987 -12.48344 -12.24365 -11.92963 -11.77142 -11.11374 -11.05908 -10.85902 -10.61906 -10.00753 -9.62665 -8.23386 -6.41999 1.44003 1.45708 1.54189 2.38017 2.89141 2.97393 3.44873 3.55459 3.98942 4.06370 4.09393 4.15908 4.29733 4.43730 4.49870 4.55245 4.60494 4.69594 4.93113 5.07509 5.27700 5.39817 5.48107 5.76620 5.98042 6.35815 6.64293 6.78935 6.90972 7.31220 7.56745 8.81754 Molecular weight = 217.11amu Principal moments of inertia in cm(-1) A = 0.044675 B = 0.007485 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.597328 B = 3739.877910 C = 3921.992938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.024 3.976 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.557 4.557 8 H 0.069 0.931 9 C 0.208 3.792 10 O -0.587 6.587 11 C 0.013 3.987 12 N -0.479 5.479 13 C -0.009 4.009 14 C 0.111 3.889 15 H 0.084 0.916 16 O -0.570 6.570 17 C 0.055 3.945 18 O -0.589 6.589 19 C 0.016 3.984 20 H 0.274 0.726 21 H 0.383 0.617 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.378 0.622 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.397 0.603 30 H 0.040 0.960 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.060 -8.206 8.243 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.175 4.175 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.595 4.595 8 H 0.087 0.913 9 C 0.167 3.833 10 O -0.399 6.399 11 C -0.115 4.115 12 N -0.202 5.202 13 C -0.138 4.138 14 C 0.052 3.948 15 H 0.102 0.898 16 O -0.376 6.376 17 C -0.023 4.023 18 O -0.398 6.398 19 C -0.113 4.113 20 H 0.084 0.916 21 H 0.237 0.763 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.118 0.882 26 H 0.226 0.774 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.247 0.753 30 H 0.058 0.942 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.694 -9.174 7.290 13.028 hybrid contribution 1.378 1.792 0.907 2.436 sum 7.072 -7.382 8.197 13.103 Atomic orbital electron populations 1.69387 1.07438 1.28739 1.50751 1.25877 0.95751 1.02985 0.92933 0.85413 0.78229 0.77818 0.78981 1.19621 1.20776 1.19156 1.21818 0.93885 0.91530 1.52234 0.91299 1.19924 0.85570 0.92040 0.85798 1.86000 1.45918 1.47822 1.60162 1.24009 0.95532 0.94776 0.97229 1.68794 1.27137 1.13473 1.10800 1.23287 0.95853 1.00711 0.93952 1.21884 0.95369 0.86382 0.91176 0.89840 1.86675 1.38897 1.33609 1.78401 1.22813 0.90911 0.98537 0.90072 1.86517 1.37706 1.76185 1.39377 1.24193 0.99227 0.88304 0.99582 0.91622 0.76261 0.89929 0.91282 0.92786 0.88186 0.77402 0.91585 0.90415 0.75268 0.94181 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.90 11.02 21.45 0.24 -50.66 16 2 C 0.02 1.27 5.39 84.65 0.46 1.72 16 3 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.56 -29.70 8.69 25.60 0.22 -29.48 16 8 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.21 10.79 1.56 -11.19 -0.02 10.77 16 10 O -0.59 -33.67 13.53 -148.98 -2.02 -35.68 16 11 C 0.01 0.57 7.12 83.58 0.60 1.16 16 12 N -0.48 -20.00 6.41 -928.20 -5.95 -25.95 16 13 C -0.01 -0.27 4.67 86.30 0.40 0.13 16 14 C 0.11 3.32 3.52 30.59 0.11 3.43 16 15 H 0.08 2.85 8.14 -2.39 -0.02 2.84 16 16 O -0.57 -19.91 11.22 -144.32 -1.62 -21.52 16 17 C 0.06 1.13 6.68 71.98 0.48 1.62 16 18 O -0.59 -13.44 13.62 -144.32 -1.97 -15.40 16 19 C 0.02 0.78 5.21 83.58 0.44 1.21 16 20 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 21 H 0.38 22.51 6.33 -74.06 -0.47 22.04 16 22 H 0.08 3.17 7.73 -2.39 -0.02 3.15 16 23 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 24 H 0.05 1.51 7.56 -2.39 -0.02 1.49 16 25 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.38 10.77 8.56 -74.05 -0.63 10.14 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.40 4.58 9.12 -74.06 -0.68 3.90 16 30 H 0.04 2.13 8.03 -2.39 -0.02 2.11 16 31 H 0.06 2.74 7.12 -2.39 -0.02 2.72 16 Total: -1.00 -66.80 260.80 -7.23 -74.03 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.62 Total: 41.23 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 2.68 Total: -9.44 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -5.72 Total: -76.61 kcal Atomic # 8 Polarization: -67.01 SS G_CDS: -5.60 Total: -72.61 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -66.80 -7.23 -74.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459994542.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.837 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds