Wall clock time and date at job start Mon Mar 30 2020 02:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 H 1.08998 * 115.55426 * 9.41208 * 11 10 9 13 13 C 1.52999 * 117.49720 * 223.74854 * 11 10 9 14 14 C 1.53003 * 117.49880 * 155.08678 * 11 10 9 15 15 H 1.08993 * 117.50077 * 359.97438 * 14 11 10 16 16 C 1.50701 * 117.49695 * 214.97658 * 14 11 10 17 17 C 1.38243 * 119.99848 * 299.72703 * 16 14 11 18 18 C 1.38235 * 119.99575 * 179.81124 * 17 16 14 19 19 C 1.38242 * 120.00126 * 0.39696 * 18 17 16 20 20 C 1.38232 * 119.99643 * 359.85545 * 19 18 17 21 21 C 1.38228 * 120.00051 * 120.00000 * 16 14 11 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.00902 * 111.00178 * 56.04567 * 10 9 7 26 26 H 1.09000 * 117.49823 * 359.97438 * 13 11 10 27 27 H 1.09003 * 117.50027 * 144.99740 * 13 11 10 28 28 H 1.07994 * 120.00039 * 0.02562 * 17 16 14 29 29 H 1.07992 * 120.00045 * 180.23137 * 18 17 16 30 30 H 1.07991 * 119.99876 * 179.83427 * 19 18 17 31 31 H 1.08007 * 119.99829 * 179.97438 * 20 19 18 32 32 H 1.08007 * 119.99880 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.4287 -4.8579 -0.1608 13 6 2.0295 -5.9952 0.9404 14 6 2.2513 -6.1149 -0.5695 15 1 3.2614 -5.9513 -0.9449 16 6 1.4409 -7.1458 -1.3122 17 6 0.4199 -7.8183 -0.6670 18 6 -0.3260 -8.7611 -1.3494 19 6 -0.0455 -9.0374 -2.6746 20 6 0.9789 -8.3686 -3.3181 21 6 1.7222 -7.4230 -2.6368 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.8400 -3.5482 0.7836 26 1 2.8941 -5.7530 1.5584 27 1 1.2975 -6.6620 1.3962 28 1 0.2027 -7.6046 0.3691 29 1 -1.1261 -9.2838 -0.8465 30 1 -0.6265 -9.7758 -3.2068 31 1 1.1983 -8.5846 -4.3533 32 1 2.5226 -6.9004 -3.1397 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006116285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:29 Heat of formation + Delta-G solvation = 39.652512 kcal Electronic energy + Delta-G solvation = -13476.057792 eV Core-core repulsion = 11208.598535 eV Total energy + Delta-G solvation = -2267.459258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53038 -37.19301 -34.04004 -31.87724 -30.89054 -29.91012 -25.64671 -23.69031 -22.49838 -22.00916 -21.01132 -19.99904 -17.21055 -16.74049 -15.52029 -14.96448 -14.50216 -14.41491 -13.74042 -13.46954 -13.35230 -12.86821 -12.61720 -12.12723 -11.85585 -11.47191 -11.12916 -10.89887 -10.83952 -10.67943 -10.51270 -10.11311 -9.99161 -8.88438 -8.78781 -8.46422 -8.38172 -7.33911 -6.40508 -4.09957 1.38907 1.44239 3.43815 3.46570 3.65053 3.72659 4.29742 4.49271 4.65069 4.91695 4.98820 5.09762 5.14685 5.23695 5.36230 5.37170 5.54097 5.61286 5.71253 5.89135 6.05569 6.09483 6.21914 6.28901 6.53281 6.55023 6.77095 6.90591 7.05089 7.10261 7.72008 8.08627 8.38065 8.52962 8.83163 9.61950 10.99434 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050643 B = 0.005067 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.751859 B = 5524.805113 C = 5612.174486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.075 2.925 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.598 4.598 8 H 0.056 0.944 9 C 0.185 3.815 10 N -0.652 5.652 11 C 0.055 3.945 12 H 0.102 0.898 13 C -0.205 4.205 14 C -0.122 4.122 15 H 0.113 0.887 16 C -0.036 4.036 17 C -0.126 4.126 18 C -0.119 4.119 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.114 4.114 22 H 0.267 0.733 23 H -0.020 1.020 24 H 0.020 0.980 25 H 0.336 0.664 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -16.402 -1.996 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.902 3.098 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.637 4.637 8 H 0.075 0.925 9 C 0.058 3.942 10 N -0.280 5.280 11 C -0.057 4.057 12 H 0.120 0.880 13 C -0.244 4.244 14 C -0.142 4.142 15 H 0.131 0.869 16 C -0.036 4.036 17 C -0.144 4.144 18 C -0.137 4.137 19 C -0.152 4.152 20 C -0.137 4.137 21 C -0.132 4.132 22 H 0.077 0.923 23 H -0.003 1.003 24 H 0.038 0.962 25 H 0.155 0.845 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.493 -14.686 -2.677 15.002 hybrid contribution -0.133 -1.841 0.831 2.024 sum 1.359 -16.527 -1.847 16.685 Atomic orbital electron populations 1.70797 1.06895 1.30460 1.46664 1.25884 0.96470 1.02788 0.93691 0.83464 0.74775 0.74956 0.76572 1.20771 1.21428 1.21328 1.21988 0.94840 0.91207 1.55657 0.92531 1.19723 0.91169 0.88544 0.94738 1.60215 1.20109 0.99669 1.48054 1.22598 0.96433 0.86639 1.00050 0.88014 1.23598 1.03966 1.04707 0.92115 1.21372 1.00369 0.98232 0.94231 0.86851 1.19258 0.95312 0.95260 0.93775 1.21093 0.96100 0.96997 1.00163 1.21092 0.99522 0.98235 0.94825 1.21082 0.98411 1.00618 0.95102 1.21115 0.96102 0.96749 0.99700 1.21018 1.00304 0.97947 0.93982 0.92275 1.00267 0.96162 0.84525 0.88541 0.88898 0.86049 0.86339 0.86446 0.86234 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.65 55.43 0.76 -27.37 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.43 29.90 -169.99 -5.08 20.35 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.60 -17.30 9.32 -34.44 -0.32 -17.63 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.18 4.90 4.60 -4.98 -0.02 4.87 16 10 N -0.65 -14.32 6.77 -107.99 -0.73 -15.05 16 11 C 0.06 1.01 5.95 -67.71 -0.40 0.60 16 12 H 0.10 1.95 7.90 -51.93 -0.41 1.54 16 13 C -0.21 -3.00 9.56 -26.69 -0.26 -3.26 16 14 C -0.12 -1.91 5.97 -91.73 -0.55 -2.46 16 15 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 16 C -0.04 -0.52 5.61 -104.62 -0.59 -1.11 16 17 C -0.13 -1.67 9.30 -39.58 -0.37 -2.04 16 18 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 19 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 20 C -0.12 -1.41 10.05 -39.59 -0.40 -1.81 16 21 C -0.11 -1.56 9.74 -39.59 -0.39 -1.94 16 22 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 23 H -0.02 -0.56 8.01 -51.93 -0.42 -0.97 16 24 H 0.02 0.57 8.01 -51.93 -0.42 0.16 16 25 H 0.34 7.00 8.51 -39.29 -0.33 6.67 16 26 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 27 H 0.09 1.20 6.17 -51.93 -0.32 0.88 16 28 H 0.12 1.49 6.02 -52.49 -0.32 1.17 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 32 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 275.40 15.07 4.15 4.15 Total: -1.00 -31.15 275.40 -9.33 -40.48 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.25 Total: 5.57 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -4.18 Total: -28.13 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.03 Total: -42.42 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.15 -9.33 -40.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006116285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.136 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds