Wall clock time and date at job start Mon Mar 30 2020 02:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99820 * 180.02562 * 10 9 7 12 12 H 1.08998 * 115.55426 * 9.41208 * 11 10 9 13 13 C 1.52999 * 117.49720 * 223.74854 * 11 10 9 14 14 C 1.53003 * 117.49880 * 155.08678 * 11 10 9 15 15 H 1.08993 * 117.50077 * 359.97438 * 14 11 10 16 16 C 1.50701 * 117.49695 * 214.97658 * 14 11 10 17 17 C 1.38243 * 119.99848 * 299.72703 * 16 14 11 18 18 C 1.38235 * 119.99575 * 179.81124 * 17 16 14 19 19 C 1.38242 * 120.00126 * 0.39696 * 18 17 16 20 20 C 1.38232 * 119.99643 * 359.85545 * 19 18 17 21 21 C 1.38228 * 120.00051 * 120.00000 * 16 14 11 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.00902 * 111.00178 * 56.04567 * 10 9 7 26 26 H 1.09000 * 117.49823 * 359.97438 * 13 11 10 27 27 H 1.09003 * 117.50027 * 144.99740 * 13 11 10 28 28 H 1.07994 * 120.00039 * 0.02562 * 17 16 14 29 29 H 1.07992 * 120.00045 * 180.23137 * 18 17 16 30 30 H 1.07991 * 119.99876 * 179.83427 * 19 18 17 31 31 H 1.08007 * 119.99829 * 179.97438 * 20 19 18 32 32 H 1.08007 * 119.99880 * 359.97438 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 1.5054 -4.9070 0.0012 12 1 0.4287 -4.8579 -0.1608 13 6 2.0295 -5.9952 0.9404 14 6 2.2513 -6.1149 -0.5695 15 1 3.2614 -5.9513 -0.9449 16 6 1.4409 -7.1458 -1.3122 17 6 0.4199 -7.8183 -0.6670 18 6 -0.3260 -8.7611 -1.3494 19 6 -0.0455 -9.0374 -2.6746 20 6 0.9789 -8.3686 -3.3181 21 6 1.7222 -7.4230 -2.6368 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.8400 -3.5482 0.7836 26 1 2.8941 -5.7530 1.5584 27 1 1.2975 -6.6620 1.3962 28 1 0.2027 -7.6046 0.3691 29 1 -1.1261 -9.2838 -0.8465 30 1 -0.6265 -9.7758 -3.2068 31 1 1.1983 -8.5846 -4.3533 32 1 2.5226 -6.9004 -3.1397 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006116285.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:29 Heat of formation + Delta-G solvation = 20.653470 kcal Electronic energy + Delta-G solvation = -13476.881653 eV Core-core repulsion = 11208.598535 eV Total energy + Delta-G solvation = -2268.283118 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61082 -38.52122 -36.00653 -33.70775 -31.84486 -31.10997 -27.72495 -24.78674 -24.29679 -23.28574 -22.46052 -21.15958 -19.09242 -18.04443 -16.84410 -16.25828 -15.87209 -15.70815 -15.58418 -15.06823 -14.51840 -14.20060 -13.98038 -13.79317 -13.30562 -13.03789 -12.74816 -12.54747 -12.15023 -12.03221 -11.91317 -11.82663 -11.34157 -10.81514 -10.63941 -9.84064 -9.66288 -9.00131 -8.74816 -6.46398 0.39341 0.48441 1.53610 1.62514 1.82383 2.54355 2.64676 3.06584 3.11078 3.23963 3.77688 3.92104 3.98552 4.10705 4.13884 4.23217 4.30476 4.58749 4.61434 4.69622 4.75491 4.87077 4.93761 5.05741 5.15852 5.17084 5.57305 5.60331 5.67838 5.73456 5.96454 6.11246 6.32655 6.48627 6.59825 7.36404 8.64963 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050643 B = 0.005067 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.751859 B = 5524.805113 C = 5612.174486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.036 4.036 3 Si 1.126 2.874 4 H -0.282 1.282 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.615 4.615 8 H 0.058 0.942 9 C 0.198 3.802 10 N -0.654 5.654 11 C 0.018 3.982 12 H 0.085 0.915 13 C -0.176 4.176 14 C -0.106 4.106 15 H 0.110 0.890 16 C -0.062 4.062 17 C -0.137 4.137 18 C -0.123 4.123 19 C -0.132 4.132 20 C -0.123 4.123 21 C -0.132 4.132 22 H 0.253 0.747 23 H -0.039 1.039 24 H -0.007 1.007 25 H 0.341 0.659 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -17.623 -2.111 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.233 4.233 3 Si 0.946 3.054 4 H -0.208 1.208 5 H -0.190 1.190 6 H -0.195 1.195 7 C -0.653 4.653 8 H 0.076 0.924 9 C 0.071 3.929 10 N -0.283 5.283 11 C -0.093 4.093 12 H 0.103 0.897 13 C -0.215 4.215 14 C -0.125 4.125 15 H 0.128 0.872 16 C -0.063 4.063 17 C -0.155 4.155 18 C -0.141 4.141 19 C -0.150 4.150 20 C -0.141 4.141 21 C -0.150 4.150 22 H 0.062 0.938 23 H -0.022 1.022 24 H 0.011 0.989 25 H 0.160 0.840 26 H 0.127 0.873 27 H 0.132 0.868 28 H 0.146 0.854 29 H 0.162 0.838 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.148 -15.960 -2.791 16.344 hybrid contribution -0.382 -1.610 0.827 1.850 sum 1.766 -17.569 -1.963 17.767 Atomic orbital electron populations 1.70931 1.07993 1.29657 1.48608 1.27546 0.96488 1.06926 0.92370 0.82833 0.73983 0.70491 0.78118 1.20767 1.19045 1.19540 1.22368 0.95142 0.92440 1.55348 0.92370 1.19371 0.91218 0.89885 0.92468 1.60121 1.19502 1.00079 1.48590 1.22539 0.95787 0.86086 1.04934 0.89719 1.23678 1.04072 1.01803 0.91908 1.21322 0.99738 0.96281 0.95195 0.87163 1.19315 0.96449 0.96044 0.94461 1.21276 0.96039 0.97426 1.00742 1.21453 0.99708 0.97698 0.95259 1.21504 0.97955 1.00481 0.95055 1.21446 0.95803 0.95999 1.00848 1.21210 1.01021 0.98850 0.93959 0.93796 1.02167 0.98936 0.84023 0.87346 0.86808 0.85423 0.83816 0.83482 0.83875 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.90 13.65 21.45 0.29 -58.61 16 2 C -0.04 -2.11 5.46 84.65 0.46 -1.65 16 3 Si 1.13 50.64 29.90 68.60 2.05 52.69 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.62 -36.14 9.32 25.60 0.24 -35.90 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.20 10.94 4.60 85.56 0.39 11.33 16 10 N -0.65 -29.42 6.77 -495.57 -3.35 -32.78 16 11 C 0.02 0.66 5.95 44.92 0.27 0.93 16 12 H 0.08 3.42 7.90 -2.39 -0.02 3.40 16 13 C -0.18 -4.96 9.56 30.62 0.29 -4.66 16 14 C -0.11 -3.27 5.97 -11.51 -0.07 -3.34 16 15 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 16 C -0.06 -1.78 5.61 -19.87 -0.11 -1.89 16 17 C -0.14 -3.46 9.30 22.27 0.21 -3.26 16 18 C -0.12 -2.62 10.05 22.27 0.22 -2.39 16 19 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 20 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 21 C -0.13 -3.51 9.74 22.27 0.22 -3.29 16 22 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 23 H -0.04 -2.26 8.01 -2.39 -0.02 -2.28 16 24 H -0.01 -0.44 8.01 -2.38 -0.02 -0.46 16 25 H 0.34 14.35 8.51 -89.69 -0.76 13.58 16 26 H 0.11 2.81 8.09 -2.39 -0.02 2.79 16 27 H 0.11 2.73 6.17 -2.39 -0.01 2.71 16 28 H 0.13 2.94 6.02 -2.91 -0.02 2.92 16 29 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.15 2.01 8.06 -2.92 -0.02 1.98 16 31 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -67.94 275.40 2.00 -65.94 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.44 Total: 21.74 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 2.57 Total: -48.98 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -3.06 Total: -91.39 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Total: -67.94 2.00 -65.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006116285.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.590 kcal (2) G-P(sol) polarization free energy of solvation -67.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds