Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00018 * 2 1 4 4 N 1.46500 * 109.46680 * 125.00733 * 3 2 1 5 5 C 1.46507 * 119.99810 * 270.00045 * 4 3 2 6 6 C 1.50701 * 109.47060 * 270.00183 * 5 4 3 7 7 H 1.08007 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00280 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00195 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99862 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47672 * 89.99392 * 10 8 6 12 12 H 1.48498 * 109.47319 * 209.99692 * 10 8 6 13 13 H 1.48502 * 109.47222 * 329.99369 * 10 8 6 14 14 C 1.39672 * 120.00547 * 90.00177 * 4 3 2 15 15 C 1.38918 * 120.07035 * 359.97438 * 14 4 3 16 16 C 1.38103 * 119.92232 * 180.26003 * 15 14 4 17 17 C 1.38291 * 120.07426 * 359.43747 * 16 15 14 18 18 C 1.38281 * 120.14889 * 0.56232 * 17 16 15 19 19 C 1.38103 * 120.07737 * 359.72142 * 18 17 16 20 20 H 1.07995 * 120.00001 * 179.97438 * 1 2 3 21 21 H 1.07998 * 119.99724 * 359.97438 * 1 2 3 22 22 H 1.08005 * 119.99942 * 180.02562 * 2 1 3 23 23 H 1.08998 * 109.47098 * 5.00848 * 3 2 1 24 24 H 1.08996 * 109.47078 * 245.00049 * 3 2 1 25 25 H 1.08997 * 109.46876 * 29.99909 * 5 4 3 26 26 H 1.08993 * 109.47226 * 150.00097 * 5 4 3 27 27 H 0.97001 * 119.99665 * 180.02562 * 9 8 6 28 28 H 1.08002 * 120.03585 * 359.97438 * 15 14 4 29 29 H 1.08004 * 119.95970 * 179.72372 * 16 15 14 30 30 H 1.07994 * 119.92283 * 180.28458 * 17 16 15 31 31 H 1.07998 * 119.96595 * 179.74375 * 18 17 16 32 32 H 1.08001 * 120.04036 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.5590 1.8647 2.4249 6 6 2.8445 3.3433 2.4806 7 1 3.3042 3.8367 1.6369 8 6 2.5187 4.0664 3.6084 9 7 2.7683 5.3567 3.6572 10 14 1.7242 3.2130 5.0678 11 1 2.7802 2.7226 5.9896 12 1 0.8474 4.1729 5.7854 13 1 0.9133 2.0649 4.5886 14 6 4.2954 0.8491 0.9769 15 6 4.7092 0.3430 -0.2489 16 6 5.9952 -0.1384 -0.3967 17 6 6.8742 -0.1063 0.6704 18 6 6.4655 0.3969 1.8919 19 6 5.1792 0.8745 2.0483 20 1 -0.5400 -0.9353 -0.0004 21 1 -0.5399 0.9353 0.0004 22 1 1.8501 -0.9354 -0.0004 23 1 1.3586 2.1316 0.0897 24 1 2.6213 1.4026 -0.9314 25 1 1.4890 1.6964 2.5460 26 1 3.0991 1.3600 3.2259 27 1 2.5394 5.8653 4.4508 28 1 4.0246 0.3217 -1.0839 29 1 6.3161 -0.5361 -1.3482 30 1 7.8806 -0.4791 0.5507 31 1 7.1531 0.4168 2.7244 32 1 4.8605 1.2670 3.0027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019441700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = 38.468191 kcal Electronic energy + Delta-G solvation = -14151.639256 eV Core-core repulsion = 11884.128642 eV Total energy + Delta-G solvation = -2267.510614 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38603 -37.59016 -35.13237 -34.09067 -31.83193 -30.87739 -29.35657 -26.50091 -24.29814 -22.86886 -21.62636 -20.61865 -19.05197 -18.38190 -17.00990 -16.49326 -16.01923 -15.71901 -15.19732 -14.95868 -14.70090 -14.31653 -14.04428 -13.71422 -13.35835 -13.04289 -12.63983 -12.49300 -12.29874 -12.12437 -11.94341 -11.74897 -11.56126 -10.83712 -10.53821 -10.31921 -9.68418 -8.34455 -7.97774 -6.39477 0.68363 0.89599 1.30587 1.33015 1.34681 1.44391 2.29237 2.60791 2.99392 3.15906 4.02304 4.12328 4.19114 4.26186 4.38965 4.52302 4.72024 4.74134 4.80074 4.82258 4.93438 5.04992 5.08468 5.29039 5.45242 5.56897 5.68852 5.74599 5.84891 5.87106 6.10125 6.23141 6.59512 6.69481 6.86436 7.26032 8.82940 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.010889 C = 0.008166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.062332 B = 2570.858696 C = 3428.186659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.176 4.176 3 C 0.148 3.852 4 N -0.617 5.617 5 C 0.236 3.764 6 C -0.535 4.535 7 H 0.026 0.974 8 C 0.013 3.987 9 N -0.945 5.945 10 Si 0.944 3.056 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.245 1.245 14 C 0.209 3.791 15 C -0.218 4.218 16 C -0.074 4.074 17 C -0.195 4.195 18 C -0.082 4.082 19 C -0.221 4.221 20 H 0.118 0.882 21 H 0.096 0.904 22 H 0.112 0.888 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.031 0.969 26 H 0.027 0.973 27 H 0.268 0.732 28 H 0.130 0.870 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.778 -13.427 -6.149 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.195 4.195 3 C 0.026 3.974 4 N -0.324 5.324 5 C 0.113 3.887 6 C -0.574 4.574 7 H 0.044 0.956 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.767 3.233 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.169 1.169 14 C 0.106 3.894 15 C -0.241 4.241 16 C -0.093 4.093 17 C -0.215 4.215 18 C -0.101 4.101 19 C -0.243 4.243 20 H 0.136 0.864 21 H 0.114 0.886 22 H 0.130 0.870 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.165 0.835 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.556 -13.182 -6.017 14.501 hybrid contribution -0.341 0.588 0.901 1.129 sum 0.215 -12.594 -5.116 13.595 Atomic orbital electron populations 1.24021 0.95406 1.02758 0.99191 1.23375 0.96637 0.98421 1.01100 1.20511 0.91944 0.95525 0.89460 1.46690 1.09144 1.64920 1.11601 1.19268 0.94989 0.91785 0.82620 1.21661 1.40394 0.93836 1.01506 0.95580 1.25837 0.95813 0.95284 1.01549 1.70063 1.49364 1.08556 1.30504 0.85768 0.79374 0.79193 0.79014 1.19019 1.20425 1.16882 1.18229 0.84859 0.91873 0.94477 1.20862 0.98856 1.08585 0.95766 1.21175 0.92132 0.96559 0.99389 1.21121 1.00989 1.06230 0.93193 1.21109 0.94288 0.96127 0.98548 1.20874 0.95763 1.08965 0.98734 0.86383 0.88553 0.87043 0.91720 0.89680 0.95058 0.95507 0.92306 0.85189 0.83485 0.84112 0.85132 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.38 14.32 67.78 0.97 -3.41 16 2 C -0.18 -5.05 9.85 25.64 0.25 -4.80 16 3 C 0.15 5.19 5.60 85.63 0.48 5.67 16 4 N -0.62 -26.07 2.57 -705.96 -1.82 -27.89 16 5 C 0.24 11.35 3.98 85.63 0.34 11.69 16 6 C -0.54 -31.02 9.94 25.60 0.25 -30.76 16 7 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 8 C 0.01 0.77 5.47 84.65 0.46 1.23 16 9 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 10 Si 0.94 43.36 27.47 68.60 1.88 45.25 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 14 C 0.21 8.42 6.55 38.22 0.25 8.67 16 15 C -0.22 -7.20 9.21 22.40 0.21 -7.00 16 16 C -0.07 -2.08 10.04 22.25 0.22 -1.85 16 17 C -0.20 -5.56 10.04 22.29 0.22 -5.33 16 18 C -0.08 -2.74 10.04 22.25 0.22 -2.52 16 19 C -0.22 -9.03 9.21 22.40 0.21 -8.83 16 20 H 0.12 2.35 8.06 -2.91 -0.02 2.33 16 21 H 0.10 2.41 7.84 -2.91 -0.02 2.39 16 22 H 0.11 3.06 8.06 -2.91 -0.02 3.03 16 23 H 0.06 2.42 7.72 -2.39 -0.02 2.40 16 24 H 0.09 2.70 6.20 -2.39 -0.01 2.68 16 25 H 0.03 1.47 7.13 -2.39 -0.02 1.46 16 26 H 0.03 1.29 5.63 -2.39 -0.01 1.28 16 27 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.13 3.78 6.14 -2.91 -0.02 3.76 16 29 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 32 H 0.10 4.54 6.14 -2.91 -0.02 4.52 16 Total: -1.00 -66.70 272.45 5.49 -61.21 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.03 Total: 17.46 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.09 Total: -37.25 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -1.52 Total: -86.68 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Total: -66.70 5.49 -61.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019441700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.679 kcal (2) G-P(sol) polarization free energy of solvation -66.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds