Wall clock time and date at job start Mon Mar 30 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00231 * 2 1 4 4 H 1.48503 * 109.47237 * 239.99845 * 3 2 1 5 5 H 1.48507 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47323 * 119.99500 * 3 2 1 7 7 C 1.37884 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99884 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47118 * 179.97438 * 9 7 2 11 11 C 1.46902 * 111.00388 * 179.97438 * 10 9 7 12 12 H 1.09004 * 115.55559 * 350.68798 * 11 10 9 13 13 C 1.53069 * 117.49653 * 136.39693 * 11 10 9 14 14 C 1.52995 * 117.49996 * 205.00050 * 11 10 9 15 15 H 1.08999 * 117.50445 * 0.02562 * 14 11 10 16 16 C 1.50706 * 117.49785 * 145.02160 * 14 11 10 17 17 C 1.38233 * 120.00109 * 59.63524 * 16 14 11 18 18 C 1.38237 * 119.99743 * 179.80918 * 17 16 14 19 19 C 1.38234 * 120.00105 * 0.42118 * 18 17 16 20 20 C 1.38237 * 120.00029 * 359.81331 * 19 18 17 21 21 C 1.38235 * 120.00123 * 359.97438 * 20 19 18 22 22 H 0.97002 * 119.99936 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47607 * 59.99396 * 9 7 2 24 24 H 1.08995 * 109.47287 * 299.99456 * 9 7 2 25 25 H 1.00899 * 111.00110 * 56.04164 * 10 9 7 26 26 H 1.08999 * 117.49542 * 0.02562 * 13 11 10 27 27 H 1.09005 * 117.51564 * 214.96818 * 13 11 10 28 28 H 1.08004 * 119.99934 * 0.02562 * 17 16 14 29 29 H 1.07998 * 119.99890 * 180.21171 * 18 17 16 30 30 H 1.08001 * 120.00332 * 179.78788 * 19 18 17 31 31 H 1.08000 * 120.00539 * 179.97438 * 20 19 18 32 32 H 1.07999 * 120.00181 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5052 -4.9071 0.0011 12 1 0.4280 -4.8578 0.1606 13 6 2.0323 -5.9973 -0.9351 14 6 2.2498 -6.1142 0.5748 15 1 3.2592 -5.9503 0.9522 16 6 1.4378 -7.1443 1.3170 17 6 0.4096 -7.8081 0.6744 18 6 -0.3326 -8.7557 1.3541 19 6 -0.0522 -9.0333 2.6789 20 6 0.9729 -8.3660 3.3230 21 6 1.7180 -7.4215 2.6420 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8404 -3.5487 0.7818 26 1 2.8988 -5.7561 -1.5509 27 1 1.3020 -6.6654 -1.3917 28 1 0.1884 -7.5888 -0.3598 29 1 -1.1337 -9.2768 0.8510 30 1 -0.6343 -9.7713 3.2110 31 1 1.1918 -8.5826 4.3582 32 1 2.5186 -6.8999 3.1453 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034142065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:32 Heat of formation + Delta-G solvation = 25.013151 kcal Electronic energy + Delta-G solvation = -13450.399190 eV Core-core repulsion = 11182.305122 eV Total energy + Delta-G solvation = -2268.094068 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56494 -38.37656 -35.67249 -33.70581 -31.82317 -31.12604 -28.23404 -24.75533 -24.08368 -23.24725 -22.06634 -21.21351 -18.58979 -18.03262 -16.74593 -16.65532 -16.05580 -15.65651 -15.31396 -14.99087 -14.34528 -14.21778 -13.90031 -13.75819 -13.29966 -12.87966 -12.69957 -12.53058 -12.21627 -12.05595 -11.86854 -11.64815 -11.48792 -11.15397 -10.66607 -9.81254 -9.59140 -8.96331 -8.24309 -6.36732 0.41774 0.51138 1.41109 1.45169 1.53231 2.39045 2.69727 3.08810 3.10693 3.42547 3.80252 3.94266 3.98758 4.16808 4.26725 4.32559 4.38760 4.61881 4.72136 4.74158 4.96858 5.06729 5.12291 5.18998 5.21797 5.24121 5.59422 5.61036 5.63008 5.75021 5.98858 6.13695 6.38869 6.65989 6.84106 7.34434 8.87300 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050692 B = 0.005048 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.221192 B = 5545.878336 C = 5627.353541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.212 3.788 10 N -0.656 5.656 11 C 0.015 3.985 12 H 0.074 0.926 13 C -0.150 4.150 14 C -0.118 4.118 15 H 0.118 0.882 16 C -0.064 4.064 17 C -0.137 4.137 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.132 4.132 22 H 0.266 0.734 23 H 0.000 1.000 24 H -0.040 1.040 25 H 0.337 0.663 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -17.109 4.425 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.084 3.916 10 N -0.285 5.285 11 C -0.096 4.096 12 H 0.092 0.908 13 C -0.188 4.188 14 C -0.137 4.137 15 H 0.136 0.864 16 C -0.064 4.064 17 C -0.155 4.155 18 C -0.142 4.142 19 C -0.151 4.151 20 C -0.142 4.142 21 C -0.150 4.150 22 H 0.075 0.925 23 H 0.018 0.982 24 H -0.022 1.022 25 H 0.155 0.845 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.144 0.856 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.853 -16.960 3.740 17.466 hybrid contribution -0.260 1.025 0.772 1.309 sum 1.593 -15.935 4.512 16.638 Atomic orbital electron populations 1.70091 1.07933 1.28210 1.51217 1.25991 0.95800 1.03530 0.94342 0.85329 0.78068 0.77310 0.79243 1.19214 1.20696 1.18970 1.21506 0.93894 0.91287 1.51142 0.91529 1.19218 0.90569 0.88663 0.93130 1.60386 1.19683 1.00227 1.48244 1.22551 0.95528 0.86102 1.05436 0.90776 1.23359 1.03799 1.00131 0.91530 1.21468 0.99533 0.96666 0.96048 0.86404 1.19344 0.96365 0.96204 0.94485 1.21294 0.96038 0.97365 1.00805 1.21444 0.99777 0.97665 0.95314 1.21501 0.98035 1.00527 0.94993 1.21450 0.95777 0.96066 1.00861 1.21224 1.01044 0.98903 0.93782 0.92510 0.98223 1.02199 0.84452 0.87998 0.87175 0.85561 0.83981 0.83599 0.83840 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -31.46 9.32 25.60 0.24 -31.22 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.80 5.29 85.55 0.45 12.25 16 10 N -0.66 -29.47 6.74 -495.48 -3.34 -32.81 16 11 C 0.01 0.56 5.89 44.94 0.26 0.82 16 12 H 0.07 3.06 7.90 -2.38 -0.02 3.04 16 13 C -0.15 -4.52 9.79 30.62 0.30 -4.22 16 14 C -0.12 -3.52 5.84 -11.54 -0.07 -3.59 16 15 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 16 C -0.06 -1.76 5.61 -19.86 -0.11 -1.88 16 17 C -0.14 -3.49 9.29 22.27 0.21 -3.28 16 18 C -0.12 -2.65 10.05 22.27 0.22 -2.42 16 19 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 20 C -0.12 -2.59 10.05 22.27 0.22 -2.36 16 21 C -0.13 -3.28 9.74 22.27 0.22 -3.07 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 24 H -0.04 -2.38 8.14 -2.39 -0.02 -2.40 16 25 H 0.34 14.26 8.68 -89.69 -0.78 13.48 16 26 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 27 H 0.11 2.85 6.19 -2.38 -0.01 2.84 16 28 H 0.13 3.01 6.03 -2.91 -0.02 2.99 16 29 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 30 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 31 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -65.96 276.96 1.93 -64.03 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.33 Total: 20.05 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 2.63 Total: -40.77 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -3.05 Total: -89.93 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -65.96 1.93 -64.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034142065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.040 kcal (2) G-P(sol) polarization free energy of solvation -65.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds