Wall clock time and date at job start Mon Mar 30 2020 02:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86793 * 119.99925 * 2 1 4 4 H 1.48501 * 109.47010 * 239.99867 * 3 2 1 5 5 H 1.48495 * 109.47514 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46709 * 120.00368 * 3 2 1 7 7 C 1.39927 * 119.99451 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99633 * 168.56661 * 7 2 1 9 9 C 1.41047 * 120.00462 * 348.55872 * 7 2 1 10 10 C 1.40724 * 120.30771 * 328.72234 * 9 7 2 11 11 C 1.36442 * 119.95423 * 179.71863 * 10 9 7 12 12 C 1.38911 * 120.59612 * 0.02562 * 11 10 9 13 13 C 1.38156 * 120.62279 * 359.97438 * 12 11 10 14 14 C 1.38758 * 120.03049 * 0.02562 * 13 12 11 15 15 N 1.38733 * 120.29243 * 180.02562 * 14 13 12 16 16 C 1.48528 * 111.00095 * 356.73206 * 15 14 13 17 17 C 1.54946 * 103.22482 * 159.72253 * 16 15 14 18 18 C 1.54595 * 102.92090 * 322.58688 * 17 16 15 19 19 C 1.47903 * 110.99757 * 114.13330 * 15 14 13 20 20 H 0.96991 * 119.99564 * 359.97438 * 1 2 3 21 21 H 1.08010 * 120.02441 * 359.70195 * 10 9 7 22 22 H 1.07996 * 119.70716 * 179.97438 * 11 10 9 23 23 H 1.07997 * 119.68430 * 179.97438 * 12 11 10 24 24 H 1.08003 * 119.98730 * 179.97438 * 13 12 11 25 25 H 1.09001 * 110.66592 * 278.15421 * 16 15 14 26 26 H 1.08997 * 110.67271 * 41.29203 * 16 15 14 27 27 H 1.08997 * 110.72233 * 204.22595 * 17 16 15 28 28 H 1.09005 * 110.72137 * 80.94066 * 17 16 15 29 29 H 1.08998 * 110.30699 * 263.04437 * 18 17 16 30 30 H 1.08999 * 110.30936 * 140.87489 * 18 17 16 31 31 H 1.09000 * 109.91676 * 333.50328 * 19 15 14 32 32 H 1.09002 * 109.91960 * 94.79995 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6962 1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0723 -1.2211 -0.1860 9 6 1.3242 -2.4213 0.2412 10 6 0.1978 -2.4437 1.0844 11 6 -0.4621 -3.6167 1.3087 12 6 -0.0324 -4.7950 0.7117 13 6 1.0705 -4.8009 -0.1203 14 6 1.7610 -3.6227 -0.3664 15 7 2.8689 -3.6222 -1.2014 16 6 3.1888 -4.9975 -1.6622 17 6 4.0463 -4.7562 -2.9299 18 6 3.3706 -3.5244 -3.5750 19 6 2.6083 -2.8366 -2.4272 20 1 -0.4849 0.8400 0.0004 21 1 -0.1440 -1.5330 1.5539 22 1 -1.3259 -3.6294 1.9569 23 1 -0.5655 -5.7152 0.8998 24 1 1.3960 -5.7230 -0.5788 25 1 3.7626 -5.5329 -0.9058 26 1 2.2777 -5.5414 -1.9119 27 1 3.9982 -5.6164 -3.5976 28 1 5.0786 -4.5329 -2.6605 29 1 2.6769 -3.8386 -4.3549 30 1 4.1234 -2.8517 -3.9858 31 1 1.5400 -2.8288 -2.6431 32 1 2.9715 -1.8169 -2.2989 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039411655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:40 Heat of formation + Delta-G solvation = 27.324605 kcal Electronic energy + Delta-G solvation = -14634.287005 eV Core-core repulsion = 12366.293169 eV Total energy + Delta-G solvation = -2267.993836 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.10031 -36.45805 -33.57630 -31.65950 -29.82343 -28.07468 -27.37503 -24.99820 -22.10502 -21.09306 -19.67128 -19.31035 -17.27638 -16.00451 -15.35069 -15.04296 -14.18377 -13.82033 -13.19255 -13.00689 -12.50208 -12.32549 -12.01028 -11.48839 -11.36970 -11.05733 -10.95692 -10.79548 -10.73881 -10.54767 -10.35653 -10.06126 -9.54632 -9.50602 -9.13561 -8.26115 -7.33054 -6.80650 -6.54118 -4.23958 2.82428 2.99022 3.10943 3.14766 3.26118 4.00337 4.69161 4.93031 5.21197 5.25949 5.47119 5.75051 5.84170 5.98385 6.16169 6.22370 6.23785 6.31554 6.38773 6.46725 6.58981 6.73299 6.86061 7.07888 7.21071 7.29560 7.46330 7.56975 7.84044 8.07251 8.16445 8.34404 8.42371 8.77367 8.95832 9.11972 10.30879 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.013196 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.137225 B = 2121.355451 C = 3106.591802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.448 4.448 8 H 0.083 0.917 9 C 0.112 3.888 10 C -0.143 4.143 11 C -0.122 4.122 12 C -0.221 4.221 13 C -0.141 4.141 14 C -0.020 4.020 15 N -0.449 5.449 16 C 0.030 3.970 17 C -0.123 4.123 18 C -0.133 4.133 19 C 0.050 3.950 20 H 0.278 0.722 21 H 0.116 0.884 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -3.583 -4.013 6.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.101 0.899 9 C 0.109 3.891 10 C -0.163 4.163 11 C -0.141 4.141 12 C -0.241 4.241 13 C -0.161 4.161 14 C -0.117 4.117 15 N -0.166 5.166 16 C -0.097 4.097 17 C -0.161 4.161 18 C -0.172 4.172 19 C -0.075 4.075 20 H 0.089 0.911 21 H 0.134 0.866 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.009 -3.157 -3.762 6.339 hybrid contribution -0.455 0.429 -0.377 0.731 sum 3.553 -2.728 -4.139 6.099 Atomic orbital electron populations 1.69821 1.07364 1.28943 1.37198 1.25897 0.94753 1.01033 0.92729 0.86387 0.79995 0.80499 0.79913 1.19099 1.20601 1.18980 1.19406 0.96300 0.89917 1.42164 0.89869 1.17305 0.91675 0.91011 0.89120 1.20940 0.98651 0.96489 1.00213 1.20417 0.99265 0.93657 1.00748 1.20226 1.00729 0.96676 1.06464 1.20817 0.96850 0.96669 1.01781 1.18921 0.94966 0.95023 1.02794 1.61651 1.34162 1.08154 1.12600 1.23325 0.98168 0.92224 0.96032 1.22462 0.99610 0.97413 0.96620 1.22474 0.99319 0.97291 0.98083 1.22757 0.98395 0.98909 0.87484 0.91118 0.86631 0.89627 0.89651 0.88580 0.90830 0.93324 0.91916 0.91253 0.92281 0.91693 0.93878 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.02 11.06 55.55 0.61 -20.41 16 2 C 0.07 1.81 5.22 -17.32 -0.09 1.71 16 3 Si 0.91 19.05 29.58 -169.99 -5.03 14.02 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.45 -11.82 7.06 -37.89 -0.27 -12.09 16 8 H 0.08 2.19 7.27 -52.49 -0.38 1.81 16 9 C 0.11 3.01 5.43 -106.64 -0.58 2.43 16 10 C -0.14 -3.77 8.58 -39.29 -0.34 -4.11 16 11 C -0.12 -2.94 9.97 -39.98 -0.40 -3.34 16 12 C -0.22 -5.09 10.04 -39.36 -0.40 -5.49 16 13 C -0.14 -3.25 8.89 -39.42 -0.35 -3.60 16 14 C -0.02 -0.49 5.26 -83.29 -0.44 -0.93 16 15 N -0.45 -9.81 4.85 -166.66 -0.81 -10.62 16 16 C 0.03 0.54 5.54 -1.90 -0.01 0.53 16 17 C -0.12 -1.82 7.06 -24.87 -0.18 -2.00 16 18 C -0.13 -2.12 6.93 -25.37 -0.18 -2.29 16 19 C 0.05 1.03 5.56 -2.75 -0.02 1.02 16 20 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 21 H 0.12 3.13 6.45 -52.48 -0.34 2.80 16 22 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 23 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 24 H 0.10 1.97 5.58 -52.48 -0.29 1.68 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.05 0.88 5.96 -51.93 -0.31 0.57 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 32 H 0.08 1.81 6.99 -51.93 -0.36 1.45 16 LS Contribution 257.47 15.07 3.88 3.88 Total: -1.00 -27.50 257.47 -8.76 -36.25 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.18 Total: 5.03 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -3.23 Total: -28.15 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: -0.19 Total: -31.03 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.50 -8.76 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039411655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.577 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds