Wall clock time and date at job start Mon Mar 30 2020 02:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86793 * 119.99925 * 2 1 4 4 H 1.48501 * 109.47010 * 239.99867 * 3 2 1 5 5 H 1.48495 * 109.47514 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46709 * 120.00368 * 3 2 1 7 7 C 1.39927 * 119.99451 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99633 * 168.56661 * 7 2 1 9 9 C 1.41047 * 120.00462 * 348.55872 * 7 2 1 10 10 C 1.40724 * 120.30771 * 328.72234 * 9 7 2 11 11 C 1.36442 * 119.95423 * 179.71863 * 10 9 7 12 12 C 1.38911 * 120.59612 * 0.02562 * 11 10 9 13 13 C 1.38156 * 120.62279 * 359.97438 * 12 11 10 14 14 C 1.38758 * 120.03049 * 0.02562 * 13 12 11 15 15 N 1.38733 * 120.29243 * 180.02562 * 14 13 12 16 16 C 1.48528 * 111.00095 * 356.73206 * 15 14 13 17 17 C 1.54946 * 103.22482 * 159.72253 * 16 15 14 18 18 C 1.54595 * 102.92090 * 322.58688 * 17 16 15 19 19 C 1.47903 * 110.99757 * 114.13330 * 15 14 13 20 20 H 0.96991 * 119.99564 * 359.97438 * 1 2 3 21 21 H 1.08010 * 120.02441 * 359.70195 * 10 9 7 22 22 H 1.07996 * 119.70716 * 179.97438 * 11 10 9 23 23 H 1.07997 * 119.68430 * 179.97438 * 12 11 10 24 24 H 1.08003 * 119.98730 * 179.97438 * 13 12 11 25 25 H 1.09001 * 110.66592 * 278.15421 * 16 15 14 26 26 H 1.08997 * 110.67271 * 41.29203 * 16 15 14 27 27 H 1.08997 * 110.72233 * 204.22595 * 17 16 15 28 28 H 1.09005 * 110.72137 * 80.94066 * 17 16 15 29 29 H 1.08998 * 110.30699 * 263.04437 * 18 17 16 30 30 H 1.08999 * 110.30936 * 140.87489 * 18 17 16 31 31 H 1.09000 * 109.91676 * 333.50328 * 19 15 14 32 32 H 1.09002 * 109.91960 * 94.79995 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6962 1.2125 7 6 2.0084 -1.2119 -0.0005 8 1 3.0723 -1.2211 -0.1860 9 6 1.3242 -2.4213 0.2412 10 6 0.1978 -2.4437 1.0844 11 6 -0.4621 -3.6167 1.3087 12 6 -0.0324 -4.7950 0.7117 13 6 1.0705 -4.8009 -0.1203 14 6 1.7610 -3.6227 -0.3664 15 7 2.8689 -3.6222 -1.2014 16 6 3.1888 -4.9975 -1.6622 17 6 4.0463 -4.7562 -2.9299 18 6 3.3706 -3.5244 -3.5750 19 6 2.6083 -2.8366 -2.4272 20 1 -0.4849 0.8400 0.0004 21 1 -0.1440 -1.5330 1.5539 22 1 -1.3259 -3.6294 1.9569 23 1 -0.5655 -5.7152 0.8998 24 1 1.3960 -5.7230 -0.5788 25 1 3.7626 -5.5329 -0.9058 26 1 2.2777 -5.5414 -1.9119 27 1 3.9982 -5.6164 -3.5976 28 1 5.0786 -4.5329 -2.6605 29 1 2.6769 -3.8386 -4.3549 30 1 4.1234 -2.8517 -3.9858 31 1 1.5400 -2.8288 -2.6431 32 1 2.9715 -1.8169 -2.2989 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039411655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:40 Heat of formation + Delta-G solvation = 12.145576 kcal Electronic energy + Delta-G solvation = -14634.945217 eV Core-core repulsion = 12366.293169 eV Total energy + Delta-G solvation = -2268.652048 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77989 -38.17108 -35.48061 -33.24501 -31.68617 -29.59419 -29.13365 -26.89402 -23.74213 -22.82151 -21.17365 -21.06589 -19.17517 -17.72997 -16.93049 -16.70370 -15.93699 -15.57545 -14.90331 -14.62740 -14.27493 -13.90266 -13.63989 -13.22857 -12.99081 -12.73981 -12.71603 -12.48053 -12.16535 -12.11242 -11.90828 -11.53135 -11.42528 -11.21854 -11.02120 -10.02275 -9.26259 -8.67791 -8.38296 -6.21927 0.97915 1.08816 1.37841 1.48445 1.52663 2.23561 2.79653 3.35491 3.74905 3.87018 3.94751 4.22400 4.31830 4.51751 4.59004 4.68166 4.75545 4.87297 4.95909 5.02263 5.08960 5.22896 5.23406 5.29972 5.38531 5.46420 5.59434 5.76884 5.94185 6.19298 6.31400 6.44252 6.54968 6.85014 7.01646 7.21720 8.43293 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.023482 B = 0.013196 C = 0.009011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.137225 B = 2121.355451 C = 3106.591802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.470 4.470 8 H 0.073 0.927 9 C 0.075 3.925 10 C -0.169 4.169 11 C -0.132 4.132 12 C -0.217 4.217 13 C -0.149 4.149 14 C -0.024 4.024 15 N -0.468 5.468 16 C 0.025 3.975 17 C -0.111 4.111 18 C -0.125 4.125 19 C 0.054 3.946 20 H 0.283 0.717 21 H 0.096 0.904 22 H 0.107 0.893 23 H 0.118 0.882 24 H 0.126 0.874 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.011 0.989 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 -4.793 -5.110 8.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.501 4.501 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.189 4.189 11 C -0.150 4.150 12 C -0.237 4.237 13 C -0.170 4.170 14 C -0.121 4.121 15 N -0.185 5.185 16 C -0.102 4.102 17 C -0.149 4.149 18 C -0.163 4.163 19 C -0.072 4.072 20 H 0.093 0.907 21 H 0.115 0.885 22 H 0.125 0.875 23 H 0.136 0.864 24 H 0.144 0.856 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.030 0.970 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.051 -4.388 -4.864 8.272 hybrid contribution -0.800 0.680 -0.028 1.050 sum 4.252 -3.708 -4.892 7.467 Atomic orbital electron populations 1.69891 1.08706 1.29988 1.38093 1.26663 0.95477 1.04060 0.91884 0.85356 0.78737 0.76316 0.79932 1.18417 1.19533 1.18834 1.19445 0.95864 0.90957 1.43804 0.90906 1.17695 0.92597 0.92381 0.90140 1.20920 0.99799 0.96817 1.01372 1.20693 0.99785 0.93397 1.01175 1.20648 1.00490 0.97416 1.05137 1.21201 0.96669 0.97368 1.01751 1.19207 0.95454 0.94844 1.02622 1.61534 1.32979 1.10859 1.13092 1.23471 0.98915 0.90004 0.97803 1.22465 0.99125 0.97953 0.95328 1.22450 0.99601 0.97788 0.96500 1.22645 0.97081 0.98520 0.88939 0.90653 0.88548 0.87482 0.86355 0.85620 0.90101 0.93181 0.88526 0.90385 0.90675 0.89896 0.97037 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.36 11.06 21.83 0.24 -45.12 16 2 C 0.03 1.65 5.22 85.24 0.45 2.09 16 3 Si 0.97 39.89 29.58 68.60 2.03 41.92 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.47 -25.85 7.06 23.37 0.17 -25.69 16 8 H 0.07 4.01 7.27 -2.91 -0.02 3.98 16 9 C 0.08 4.18 5.43 -21.17 -0.11 4.06 16 10 C -0.17 -9.23 8.58 22.46 0.19 -9.04 16 11 C -0.13 -6.36 9.97 22.01 0.22 -6.14 16 12 C -0.22 -9.67 10.04 22.41 0.22 -9.45 16 13 C -0.15 -6.72 8.89 22.37 0.20 -6.52 16 14 C -0.02 -1.18 5.26 38.99 0.21 -0.97 16 15 N -0.47 -20.31 4.85 -681.18 -3.30 -23.61 16 16 C 0.02 0.83 5.54 86.65 0.48 1.31 16 17 C -0.11 -2.87 7.06 31.80 0.22 -2.65 16 18 C -0.13 -3.66 6.93 31.47 0.22 -3.44 16 19 C 0.05 2.23 5.56 86.45 0.48 2.71 16 20 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 21 H 0.10 5.51 6.45 -2.91 -0.02 5.49 16 22 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 23 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 24 H 0.13 4.81 5.58 -2.91 -0.02 4.80 16 25 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.05 1.66 5.96 -2.39 -0.01 1.64 16 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.01 0.52 7.75 -2.39 -0.02 0.50 16 32 H 0.06 2.74 6.99 -2.39 -0.02 2.72 16 Total: -1.00 -61.09 257.47 3.01 -58.08 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 1.10 Total: 22.44 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 2.94 Total: -53.71 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -3.06 Total: -68.73 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -61.09 3.01 -58.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039411655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.229 kcal (2) G-P(sol) polarization free energy of solvation -61.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds