Wall clock time and date at job start Mon Mar 30 2020 02:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86794 * 120.00318 * 2 1 4 4 H 1.48506 * 109.47211 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47128 * 119.99725 * 3 2 1 6 6 H 1.48502 * 109.46923 * 240.00009 * 3 2 1 7 7 C 1.39945 * 119.99375 * 179.72163 * 2 1 3 8 8 H 1.07999 * 119.99620 * 155.06057 * 7 2 1 9 9 C 1.41395 * 120.00479 * 335.06041 * 7 2 1 10 10 C 1.40731 * 120.24066 * 333.50770 * 9 7 2 11 11 C 1.37604 * 119.74064 * 179.76091 * 10 9 7 12 12 C 1.38645 * 120.25132 * 0.49412 * 11 10 9 13 13 C 1.38616 * 120.50344 * 359.75936 * 12 11 10 14 14 C 1.37639 * 120.24520 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.12820 * 179.97438 * 14 13 12 16 16 H 1.09004 * 109.87810 * 220.44678 * 15 14 13 17 17 C 1.54314 * 109.88566 * 99.25302 * 15 14 13 18 18 C 1.55150 * 103.01683 * 218.31127 * 17 15 14 19 19 C 1.54906 * 101.65089 * 35.64841 * 18 17 15 20 20 N 1.47439 * 109.88914 * 341.48100 * 15 14 13 21 21 H 0.97003 * 120.00769 * 174.39374 * 1 2 3 22 22 H 1.07994 * 120.13151 * 359.97438 * 10 9 7 23 23 H 1.07999 * 119.87344 * 180.20957 * 11 10 9 24 24 H 1.08004 * 119.75600 * 179.74287 * 12 11 10 25 25 H 1.08001 * 119.88142 * 179.97438 * 13 12 11 26 26 H 1.09004 * 110.70820 * 336.68695 * 17 15 14 27 27 H 1.08999 * 110.71289 * 99.93198 * 17 15 14 28 28 H 1.08997 * 110.98753 * 277.55907 * 18 17 15 29 29 H 1.09000 * 111.02277 * 153.75540 * 18 17 15 30 30 H 1.09006 * 110.37310 * 204.09866 * 19 18 17 31 31 H 1.09000 * 110.36906 * 81.76439 * 19 18 17 32 32 H 1.00904 * 110.99560 * 240.68746 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0960 1.6963 1.2125 6 1 3.0960 1.6962 -1.2125 7 6 2.0078 -1.2120 0.0059 8 1 3.0123 -1.2576 -0.3883 9 6 1.3997 -2.3769 0.5279 10 6 0.3945 -2.2736 1.5074 11 6 -0.1938 -3.4138 2.0047 12 6 0.2073 -4.6612 1.5518 13 6 1.2001 -4.7752 0.5911 14 6 1.7987 -3.6481 0.0756 15 6 2.8781 -3.7751 -0.9683 16 1 3.6720 -3.0549 -0.7701 17 6 2.2828 -3.5324 -2.3712 18 6 3.0321 -4.5664 -3.2524 19 6 3.1780 -5.7612 -2.2772 20 7 3.4278 -5.1432 -0.9576 21 1 -0.4851 -0.8360 -0.0821 22 1 0.0837 -1.3031 1.8649 23 1 -0.9678 -3.3368 2.7540 24 1 -0.2570 -5.5511 1.9506 25 1 1.5051 -5.7520 0.2458 26 1 1.2106 -3.7287 -2.3741 27 1 2.4908 -2.5168 -2.7077 28 1 4.0084 -4.1874 -3.5544 29 1 2.4367 -4.8430 -4.1225 30 1 4.0210 -6.3879 -2.5685 31 1 2.2589 -6.3466 -2.2543 32 1 4.4136 -5.1351 -0.7428 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369542.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:17 Heat of formation + Delta-G solvation = -8.717468 kcal Electronic energy + Delta-G solvation = -14552.555982 eV Core-core repulsion = 12282.999245 eV Total energy + Delta-G solvation = -2269.556737 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35296 -38.44580 -35.66452 -32.51038 -31.23759 -30.68657 -28.58813 -26.83479 -23.35248 -22.69135 -21.97664 -20.75900 -19.49750 -17.73566 -16.94320 -16.21633 -15.81343 -15.67177 -15.21491 -14.49485 -14.21411 -14.11707 -13.68716 -13.19289 -13.02538 -12.82503 -12.65008 -12.30327 -12.06917 -11.99694 -11.95669 -11.68509 -11.31517 -11.13262 -10.79567 -9.44794 -9.39018 -9.25348 -9.02005 -6.35025 0.97969 1.05169 1.49852 1.64986 1.77866 2.34935 2.75986 3.33116 3.60881 3.85356 4.02080 4.20899 4.36948 4.49169 4.55046 4.63551 4.69393 4.79315 4.95820 5.02010 5.04953 5.17742 5.19631 5.34323 5.41499 5.56905 5.81961 5.89173 5.91180 6.10338 6.19885 6.36827 6.52267 6.65883 6.90981 7.06506 8.12513 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.011890 C = 0.008790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.988948 B = 2354.302732 C = 3184.687100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.003 3.997 3 Si 1.110 2.890 4 H -0.275 1.275 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.246 4.246 11 C -0.100 4.100 12 C -0.256 4.256 13 C -0.064 4.064 14 C -0.187 4.187 15 C 0.149 3.851 16 H 0.045 0.955 17 C -0.119 4.119 18 C -0.144 4.144 19 C 0.052 3.948 20 N -0.687 5.687 21 H 0.281 0.719 22 H 0.082 0.918 23 H 0.107 0.893 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -5.540 -4.900 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.212 4.212 3 Si 0.928 3.072 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.575 4.575 8 H 0.091 0.909 9 C 0.071 3.929 10 C -0.266 4.266 11 C -0.118 4.118 12 C -0.275 4.275 13 C -0.082 4.082 14 C -0.189 4.189 15 C 0.040 3.960 16 H 0.063 0.937 17 C -0.158 4.158 18 C -0.183 4.183 19 C -0.077 4.077 20 N -0.315 5.315 21 H 0.093 0.907 22 H 0.100 0.900 23 H 0.125 0.875 24 H 0.132 0.868 25 H 0.139 0.861 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.510 -4.222 -4.517 8.282 hybrid contribution 0.276 -0.988 -0.255 1.057 sum 5.787 -5.209 -4.772 9.132 Atomic orbital electron populations 1.70553 1.09033 1.33002 1.32457 1.28250 0.95681 1.07236 0.90033 0.83098 0.74842 0.70297 0.78989 1.19978 1.19138 1.18077 1.20567 1.02709 0.94889 1.39364 0.90913 1.17847 0.91469 0.93388 0.90219 1.21090 1.05479 0.96808 1.03183 1.20878 0.98724 0.93193 0.98994 1.20806 1.04736 0.96190 1.05728 1.20755 0.94372 0.97973 0.95081 1.19947 1.03725 0.92373 1.02890 1.20418 0.93993 0.88549 0.93063 0.93724 1.22580 0.99240 0.99309 0.94686 1.23140 1.00743 0.95856 0.98543 1.22889 1.02282 0.96079 0.86481 1.61412 1.20727 1.18185 1.31209 0.90706 0.89954 0.87529 0.86824 0.86102 0.93791 0.92469 0.90404 0.89713 0.88891 0.91543 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.94 12.34 21.83 0.27 -45.67 16 2 C 0.00 0.16 4.94 85.26 0.42 0.59 16 3 Si 1.11 44.07 30.00 68.60 2.06 46.13 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.55 -29.24 8.29 23.46 0.19 -29.05 16 8 H 0.07 3.77 6.56 -2.91 -0.02 3.75 16 9 C 0.07 3.98 5.28 -21.29 -0.11 3.87 16 10 C -0.25 -13.33 7.95 22.73 0.18 -13.15 16 11 C -0.10 -4.82 10.02 22.22 0.22 -4.60 16 12 C -0.26 -11.58 10.05 22.46 0.23 -11.35 16 13 C -0.06 -2.90 9.33 22.22 0.21 -2.69 16 14 C -0.19 -9.03 5.01 -19.40 -0.10 -9.12 16 15 C 0.15 6.00 3.00 44.51 0.13 6.13 16 16 H 0.04 1.90 6.78 -2.38 -0.02 1.88 16 17 C -0.12 -4.45 6.35 31.78 0.20 -4.25 16 18 C -0.14 -3.85 7.08 31.98 0.23 -3.62 16 19 C 0.05 1.34 7.57 86.77 0.66 1.99 16 20 N -0.69 -22.15 5.62 -486.22 -2.73 -24.88 16 21 H 0.28 16.37 6.70 -92.71 -0.62 15.75 16 22 H 0.08 4.69 6.56 -2.91 -0.02 4.67 16 23 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 24 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 25 H 0.12 5.01 7.11 -2.91 -0.02 4.99 16 26 H 0.04 1.83 7.84 -2.38 -0.02 1.81 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.34 9.61 8.91 -89.69 -0.80 8.81 16 Total: -1.00 -60.04 261.45 2.52 -57.52 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.46 Total: 32.15 kcal Atomic # 6 Polarization: -67.72 SS G_CDS: 2.46 Total: -65.26 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -2.46 Total: -70.55 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.06 Total: 46.13 kcal Total: -60.04 2.52 -57.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369542.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.805 kcal (2) G-P(sol) polarization free energy of solvation -60.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds