Wall clock time and date at job start Mon Mar 30 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86793 * 120.00301 * 2 1 4 4 H 1.48499 * 109.47379 * 240.00031 * 3 2 1 5 5 H 1.48503 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47212 * 120.00123 * 3 2 1 7 7 C 1.39872 * 119.99581 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99939 * 197.96493 * 7 2 1 9 9 C 1.41131 * 119.99954 * 17.96097 * 7 2 1 10 10 C 1.40891 * 120.15492 * 24.61661 * 9 7 2 11 11 C 1.36347 * 119.83462 * 179.72075 * 10 9 7 12 12 C 1.39569 * 120.15967 * 0.25251 * 11 10 9 13 13 N 1.38865 * 119.84065 * 180.02562 * 12 11 10 14 14 C 1.46494 * 120.00056 * 179.97438 * 13 12 11 15 15 C 1.53785 * 113.61526 * 254.14346 * 14 13 12 16 16 C 1.53957 * 87.01923 * 220.04805 * 15 14 13 17 17 C 1.53782 * 113.61528 * 156.53303 * 14 13 12 18 18 C 1.39569 * 120.31589 * 0.04474 * 12 11 10 19 19 C 1.36332 * 120.16164 * 359.95517 * 18 12 11 20 20 H 0.97000 * 119.99538 * 0.02562 * 1 2 3 21 21 H 1.07993 * 120.08546 * 359.97438 * 10 9 7 22 22 H 1.07995 * 119.92036 * 180.26946 * 11 10 9 23 23 H 0.96997 * 119.99702 * 0.02562 * 13 12 11 24 24 H 1.08999 * 112.84786 * 25.33433 * 14 13 12 25 25 H 1.09002 * 113.61114 * 334.56606 * 15 14 13 26 26 H 1.09003 * 113.61588 * 105.47078 * 15 14 13 27 27 H 1.08999 * 113.53425 * 270.81488 * 16 15 14 28 28 H 1.08989 * 113.74476 * 139.93931 * 16 15 14 29 29 H 1.08994 * 113.61135 * 254.52952 * 17 14 13 30 30 H 1.08994 * 113.61248 * 25.34924 * 17 14 13 31 31 H 1.07996 * 119.91751 * 179.97438 * 18 12 11 32 32 H 1.08002 * 120.07993 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 3.0969 1.6963 -1.2125 5 1 1.2782 2.7464 -0.0006 6 1 3.0969 1.6962 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0488 -1.2341 0.2890 9 6 1.3542 -2.4039 -0.3758 10 6 0.2259 -2.3567 -1.2183 11 6 -0.3976 -3.5133 -1.5825 12 6 0.0760 -4.7414 -1.1184 13 7 -0.5638 -5.9153 -1.4939 14 6 -0.0693 -7.2063 -1.0093 15 6 0.6694 -8.0248 -2.0814 16 6 -0.0360 -9.2660 -1.5050 17 6 -1.1364 -8.3136 -1.0079 18 6 1.1894 -4.7953 -0.2785 19 6 1.8228 -3.6469 0.0937 20 1 -0.4849 0.8401 -0.0004 21 1 -0.1417 -1.4072 -1.5782 22 1 -1.2599 -3.4790 -2.2317 23 1 -1.3377 -5.8805 -2.0776 24 1 0.4765 -7.1247 -0.0694 25 1 0.3661 -7.7841 -3.1004 26 1 1.7517 -8.0373 -1.9526 27 1 0.5198 -9.7483 -0.7010 28 1 -0.3775 -9.9690 -2.2646 29 1 -1.5097 -8.5589 -0.0137 30 1 -1.9349 -8.1513 -1.7318 31 1 1.5502 -5.7491 0.0771 32 1 2.6845 -3.6901 0.7434 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044481358.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:44 Heat of formation + Delta-G solvation = 37.346069 kcal Electronic energy + Delta-G solvation = -13840.921718 eV Core-core repulsion = 11573.362446 eV Total energy + Delta-G solvation = -2267.559272 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.95619 -37.29998 -34.10230 -32.24015 -29.49416 -28.40848 -25.47356 -25.03626 -23.53288 -21.09612 -20.20101 -19.14195 -17.14082 -16.24871 -15.68626 -15.05119 -14.78463 -13.92817 -13.12484 -12.79285 -12.77040 -12.34874 -12.21863 -11.83509 -11.78163 -11.29652 -11.12690 -10.94378 -10.77696 -10.53347 -10.30326 -10.13565 -9.63737 -9.26208 -9.16490 -8.48765 -7.46142 -6.61749 -6.34913 -4.00579 2.94987 3.13021 3.15902 3.19217 3.38081 4.07431 4.39588 4.74018 4.78021 4.83985 5.04329 5.20118 5.73643 5.76893 5.84998 5.85977 5.93953 6.14973 6.26207 6.31321 6.36120 6.51392 6.91302 7.09296 7.23402 7.34713 7.64439 7.69818 7.83371 8.17583 8.37253 8.54110 8.72132 8.84008 9.08606 9.18442 10.39998 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.081270 B = 0.005817 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.449229 B = 4812.668190 C = 4996.655802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.123 4.123 11 C -0.164 4.164 12 C 0.091 3.909 13 N -0.749 5.749 14 C 0.145 3.855 15 C -0.161 4.161 16 C -0.141 4.141 17 C -0.151 4.151 18 C -0.161 4.161 19 C -0.188 4.188 20 H 0.276 0.724 21 H 0.119 0.881 22 H 0.086 0.914 23 H 0.384 0.616 24 H 0.098 0.902 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 -10.184 -2.586 10.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.143 4.143 11 C -0.186 4.186 12 C -0.006 4.006 13 N -0.382 5.382 14 C 0.037 3.963 15 C -0.200 4.200 16 C -0.179 4.179 17 C -0.190 4.190 18 C -0.182 4.182 19 C -0.208 4.208 20 H 0.087 0.913 21 H 0.136 0.864 22 H 0.104 0.896 23 H 0.217 0.783 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.382 -10.086 -2.458 10.473 hybrid contribution 0.031 0.779 -0.167 0.797 sum -1.351 -9.308 -2.624 9.764 Atomic orbital electron populations 1.69852 1.07366 1.28688 1.37687 1.25792 0.94647 1.00856 0.92719 0.86462 0.80129 0.80854 0.79725 1.19103 1.20596 1.19276 1.19333 0.97911 0.91395 1.41288 0.90997 1.17493 0.92437 0.92002 0.90966 1.20921 0.98155 0.96357 0.98866 1.20050 1.01616 0.91939 1.04994 1.17402 0.96083 0.85343 1.01770 1.43918 1.34945 1.02339 1.56989 1.22095 0.94753 0.82470 0.96981 1.23603 1.00105 0.96162 1.00167 1.22708 0.98226 0.96388 1.00619 1.23336 0.97424 0.96813 1.01402 1.19889 0.98139 0.97033 1.03189 1.20563 1.02776 0.92693 1.04806 0.91291 0.86357 0.89581 0.78279 0.88443 0.90308 0.91753 0.90359 0.91676 0.91529 0.90281 0.89400 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.75 10.96 55.54 0.61 -21.14 16 2 C 0.07 1.96 5.13 -17.33 -0.09 1.87 16 3 Si 0.90 19.44 29.60 -169.99 -5.03 14.41 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 9 C 0.07 2.03 5.57 -106.79 -0.60 1.44 16 10 C -0.12 -3.28 8.64 -39.26 -0.34 -3.62 16 11 C -0.16 -3.91 9.82 -39.77 -0.39 -4.30 16 12 C 0.09 2.02 6.67 -83.68 -0.56 1.47 16 13 N -0.75 -13.37 5.50 -51.25 -0.28 -13.65 16 14 C 0.14 2.17 3.98 -67.12 -0.27 1.90 16 15 C -0.16 -2.11 7.89 -25.82 -0.20 -2.32 16 16 C -0.14 -1.52 8.09 -25.82 -0.21 -1.73 16 17 C -0.15 -1.81 7.83 -25.92 -0.20 -2.01 16 18 C -0.16 -3.69 9.18 -39.77 -0.37 -4.06 16 19 C -0.19 -4.76 9.74 -39.27 -0.38 -5.14 16 20 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 21 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 22 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 23 H 0.38 6.22 8.71 -40.82 -0.36 5.87 16 24 H 0.10 1.55 6.16 -51.93 -0.32 1.23 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.62 8.14 -51.94 -0.42 0.20 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.09 1.80 6.04 -52.49 -0.32 1.48 16 32 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -28.20 267.18 -8.87 -37.07 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.25 Total: 9.03 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -3.94 Total: -29.75 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.33 Total: -34.78 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.20 -8.87 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044481358.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.418 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds