Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47132 * 269.99936 * 3 2 1 5 5 H 1.48506 * 109.47195 * 29.99416 * 3 2 1 6 6 H 1.48495 * 109.47489 * 149.99771 * 3 2 1 7 7 C 1.37873 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00463 * 182.52208 * 7 2 1 9 9 C 1.50698 * 120.00200 * 2.52500 * 7 2 1 10 10 H 1.08997 * 109.47345 * 174.79546 * 9 7 2 11 11 N 1.46894 * 109.47242 * 54.79175 * 9 7 2 12 12 C 1.46900 * 111.00137 * 85.00257 * 11 9 7 13 13 C 1.52997 * 117.49918 * 223.62170 * 12 11 9 14 14 C 1.53003 * 117.49831 * 154.99717 * 12 11 9 15 15 C 1.50702 * 109.46748 * 294.79308 * 9 7 2 16 16 C 1.38240 * 119.99924 * 90.50003 * 15 9 7 17 17 C 1.38231 * 119.99822 * 179.97438 * 16 15 9 18 18 C 1.38230 * 120.00289 * 359.97438 * 17 16 15 19 19 C 1.38239 * 120.00141 * 0.07217 * 18 17 16 20 20 C 1.38233 * 120.00235 * 270.47620 * 15 9 7 21 21 H 0.96999 * 120.00212 * 0.02562 * 1 2 3 22 22 H 1.00899 * 111.00197 * 321.04558 * 11 9 7 23 23 H 1.08994 * 115.54823 * 9.33505 * 12 11 9 24 24 H 1.09000 * 117.50193 * 359.97438 * 13 12 11 25 25 H 1.09005 * 117.49583 * 145.01865 * 13 12 11 26 26 H 1.08995 * 117.49768 * 214.97468 * 14 12 11 27 27 H 1.08998 * 117.50066 * 0.02562 * 14 12 11 28 28 H 1.07994 * 119.99868 * 359.97438 * 16 15 9 29 29 H 1.08007 * 119.99761 * 179.72799 * 17 16 15 30 30 H 1.08008 * 120.00214 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.00204 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.99876 * 359.97438 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0838 -1.1945 0.0417 9 6 1.2522 -2.4985 -0.0564 10 1 1.9603 -3.3229 -0.1405 11 7 0.3597 -2.4986 -1.2231 12 6 1.0738 -2.9303 -2.4321 13 6 0.8285 -2.1384 -3.7181 14 6 0.2438 -3.5437 -3.5617 15 6 0.4365 -2.6631 1.2001 16 6 -0.8628 -2.1934 1.2471 17 6 -1.6112 -2.3448 2.3994 18 6 -1.0606 -2.9664 3.5045 19 6 0.2390 -3.4353 3.4578 20 6 0.9873 -3.2842 2.3053 21 1 -0.4850 0.8400 -0.0004 22 1 -0.0613 -1.5914 -1.3564 23 1 2.0750 -3.3292 -2.2695 24 1 0.1370 -1.2974 -3.6672 25 1 1.6687 -2.0161 -4.4017 26 1 0.6993 -4.3457 -4.1425 27 1 -0.8321 -3.6265 -3.4079 28 1 -1.2931 -1.7081 0.3836 29 1 -2.6248 -1.9739 2.4376 30 1 -1.6452 -3.0844 4.4049 31 1 0.6693 -3.9206 4.3213 32 1 2.0021 -3.6520 2.2683 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055014753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = 52.412286 kcal Electronic energy + Delta-G solvation = -14500.319808 eV Core-core repulsion = 12233.413856 eV Total energy + Delta-G solvation = -2266.905952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.26616 -36.75660 -34.12256 -31.23949 -29.76274 -29.00049 -26.13858 -22.75715 -21.66419 -21.45501 -20.05768 -19.83150 -16.60327 -15.85319 -15.19117 -14.81125 -14.18101 -13.64031 -13.56239 -12.93729 -12.28943 -12.06792 -11.76665 -11.68448 -11.44066 -11.00869 -10.88362 -10.74438 -10.49794 -10.30925 -10.05563 -9.56900 -9.47777 -9.42713 -8.71583 -7.76770 -7.40648 -6.96961 -6.05602 -4.33092 2.55330 2.66778 3.20016 3.27946 3.30866 4.28271 4.66505 5.00184 5.12165 5.31667 5.69723 5.78464 5.85962 5.97345 6.05186 6.22558 6.24501 6.42589 6.49702 6.66415 6.74469 6.79265 6.87236 6.92469 7.18660 7.33061 7.56540 7.65213 7.80580 7.97354 8.07312 8.27826 8.41218 8.81793 9.04290 9.39259 10.79019 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.013770 C = 0.009528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.307422 B = 2032.877395 C = 2937.928272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.072 3.928 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.238 3.762 10 H 0.037 0.963 11 N -0.658 5.658 12 C 0.058 3.942 13 C -0.214 4.214 14 C -0.193 4.193 15 C -0.019 4.019 16 C -0.052 4.052 17 C -0.148 4.148 18 C -0.153 4.153 19 C -0.144 4.144 20 C -0.134 4.134 21 H 0.267 0.733 22 H 0.369 0.631 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.752 -3.583 -0.693 3.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.077 0.923 9 C 0.130 3.870 10 H 0.056 0.944 11 N -0.294 5.294 12 C -0.054 4.054 13 C -0.253 4.253 14 C -0.231 4.231 15 C -0.020 4.020 16 C -0.070 4.070 17 C -0.166 4.166 18 C -0.171 4.171 19 C -0.162 4.162 20 C -0.153 4.153 21 H 0.077 0.923 22 H 0.196 0.804 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.161 0.839 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.177 -4.035 -0.536 4.237 hybrid contribution 1.034 1.908 -0.030 2.170 sum -0.143 -2.127 -0.565 2.205 Atomic orbital electron populations 1.69585 1.05648 1.26929 1.49723 1.24982 0.94962 0.99251 0.93888 0.86547 0.79998 0.83125 0.78138 1.20566 1.21022 1.19919 1.21716 0.93549 0.91052 1.51352 0.92335 1.18172 0.88796 0.94740 0.85322 0.94436 1.60628 1.31368 1.36479 1.00892 1.22217 0.96091 1.00630 0.86472 1.23261 1.03321 0.94937 1.03744 1.23092 1.00247 0.95349 1.04433 1.20163 0.93717 0.92241 0.95906 1.21317 0.93631 0.94284 0.97814 1.21087 0.99359 1.01514 0.94672 1.20762 0.95834 1.02524 0.97988 1.20743 0.95009 1.02949 0.97528 1.20829 0.98943 1.01742 0.93787 0.92262 0.80353 0.88822 0.89396 0.90137 0.90087 0.89311 0.83913 0.88130 0.88340 0.88130 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.46 7.97 55.43 0.44 -22.02 16 2 C 0.07 1.84 5.05 -17.82 -0.09 1.75 16 3 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -13.93 8.74 -34.44 -0.30 -14.23 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.24 5.75 2.46 -70.02 -0.17 5.57 16 10 H 0.04 0.89 7.52 -51.93 -0.39 0.49 16 11 N -0.66 -15.07 5.67 -102.18 -0.58 -15.64 16 12 C 0.06 1.18 6.14 -67.71 -0.42 0.76 16 13 C -0.21 -3.89 10.23 -26.73 -0.27 -4.16 16 14 C -0.19 -3.31 10.46 -26.73 -0.28 -3.59 16 15 C -0.02 -0.45 4.79 -104.62 -0.50 -0.96 16 16 C -0.05 -1.21 7.66 -39.58 -0.30 -1.52 16 17 C -0.15 -3.11 10.05 -39.59 -0.40 -3.51 16 18 C -0.15 -2.99 10.05 -39.58 -0.40 -3.39 16 19 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 20 C -0.13 -2.93 9.70 -39.58 -0.38 -3.31 16 21 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 22 H 0.37 9.00 5.31 -39.29 -0.21 8.79 16 23 H 0.09 1.86 7.60 -51.93 -0.39 1.47 16 24 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.14 3.51 5.59 -52.49 -0.29 3.22 16 29 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 30 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 266.78 15.07 4.02 4.02 Total: -1.00 -25.78 266.78 -9.26 -35.04 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.21 Total: 12.97 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -3.91 Total: -29.82 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.14 Total: -37.66 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -25.78 -9.26 -35.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.455 kcal (2) G-P(sol) polarization free energy of solvation -25.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds