Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47132 * 269.99936 * 3 2 1 5 5 H 1.48506 * 109.47195 * 29.99416 * 3 2 1 6 6 H 1.48495 * 109.47489 * 149.99771 * 3 2 1 7 7 C 1.37873 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00463 * 182.52208 * 7 2 1 9 9 C 1.50698 * 120.00200 * 2.52500 * 7 2 1 10 10 H 1.08997 * 109.47345 * 174.79546 * 9 7 2 11 11 N 1.46894 * 109.47242 * 54.79175 * 9 7 2 12 12 C 1.46900 * 111.00137 * 85.00257 * 11 9 7 13 13 C 1.52997 * 117.49918 * 223.62170 * 12 11 9 14 14 C 1.53003 * 117.49831 * 154.99717 * 12 11 9 15 15 C 1.50702 * 109.46748 * 294.79308 * 9 7 2 16 16 C 1.38240 * 119.99924 * 90.50003 * 15 9 7 17 17 C 1.38231 * 119.99822 * 179.97438 * 16 15 9 18 18 C 1.38230 * 120.00289 * 359.97438 * 17 16 15 19 19 C 1.38239 * 120.00141 * 0.07217 * 18 17 16 20 20 C 1.38233 * 120.00235 * 270.47620 * 15 9 7 21 21 H 0.96999 * 120.00212 * 0.02562 * 1 2 3 22 22 H 1.00899 * 111.00197 * 321.04558 * 11 9 7 23 23 H 1.08994 * 115.54823 * 9.33505 * 12 11 9 24 24 H 1.09000 * 117.50193 * 359.97438 * 13 12 11 25 25 H 1.09005 * 117.49583 * 145.01865 * 13 12 11 26 26 H 1.08995 * 117.49768 * 214.97468 * 14 12 11 27 27 H 1.08998 * 117.50066 * 0.02562 * 14 12 11 28 28 H 1.07994 * 119.99868 * 359.97438 * 16 15 9 29 29 H 1.08007 * 119.99761 * 179.72799 * 17 16 15 30 30 H 1.08008 * 120.00214 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.00204 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.99876 * 359.97438 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0838 -1.1945 0.0417 9 6 1.2522 -2.4985 -0.0564 10 1 1.9603 -3.3229 -0.1405 11 7 0.3597 -2.4986 -1.2231 12 6 1.0738 -2.9303 -2.4321 13 6 0.8285 -2.1384 -3.7181 14 6 0.2438 -3.5437 -3.5617 15 6 0.4365 -2.6631 1.2001 16 6 -0.8628 -2.1934 1.2471 17 6 -1.6112 -2.3448 2.3994 18 6 -1.0606 -2.9664 3.5045 19 6 0.2390 -3.4353 3.4578 20 6 0.9873 -3.2842 2.3053 21 1 -0.4850 0.8400 -0.0004 22 1 -0.0613 -1.5914 -1.3564 23 1 2.0750 -3.3292 -2.2695 24 1 0.1370 -1.2974 -3.6672 25 1 1.6687 -2.0161 -4.4017 26 1 0.6993 -4.3457 -4.1425 27 1 -0.8321 -3.6265 -3.4079 28 1 -1.2931 -1.7081 0.3836 29 1 -2.6248 -1.9739 2.4376 30 1 -1.6452 -3.0844 4.4049 31 1 0.6693 -3.9206 4.3213 32 1 2.0021 -3.6520 2.2683 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055014753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = 39.630326 kcal Electronic energy + Delta-G solvation = -14500.874076 eV Core-core repulsion = 12233.413856 eV Total energy + Delta-G solvation = -2267.460220 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93600 -38.32763 -35.86438 -33.09503 -31.40512 -30.64500 -28.01699 -24.54406 -23.14828 -23.04472 -21.64842 -21.54629 -18.50261 -17.47894 -16.94216 -16.46276 -15.86386 -15.29566 -15.19549 -14.67809 -13.90575 -13.70368 -13.50082 -13.38539 -13.20385 -12.80925 -12.54847 -12.32416 -12.25988 -11.93055 -11.77634 -11.29937 -11.13932 -11.03330 -10.60994 -9.41825 -9.11057 -8.71854 -7.94325 -6.31805 0.88954 1.03141 1.36768 1.40313 1.47253 2.38236 3.04903 3.21130 3.39463 3.73949 4.19419 4.30874 4.37770 4.40564 4.52316 4.63808 4.83230 4.85021 4.92415 4.97272 5.14977 5.21225 5.24108 5.38701 5.53115 5.64445 5.70935 5.92680 6.06914 6.09564 6.37458 6.52052 6.61055 6.97284 7.17757 7.42705 8.83616 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.013770 C = 0.009528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.307422 B = 2032.877395 C = 2937.928272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.558 4.558 8 H 0.045 0.955 9 C 0.238 3.762 10 H 0.029 0.971 11 N -0.661 5.661 12 C 0.023 3.977 13 C -0.208 4.208 14 C -0.165 4.165 15 C -0.046 4.046 16 C -0.072 4.072 17 C -0.156 4.156 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.151 4.151 21 H 0.266 0.734 22 H 0.358 0.642 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 -3.953 -0.097 4.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.597 4.597 8 H 0.063 0.937 9 C 0.130 3.870 10 H 0.047 0.953 11 N -0.295 5.295 12 C -0.089 4.089 13 C -0.247 4.247 14 C -0.204 4.204 15 C -0.047 4.047 16 C -0.091 4.091 17 C -0.174 4.174 18 C -0.166 4.166 19 C -0.159 4.159 20 C -0.170 4.170 21 H 0.076 0.924 22 H 0.183 0.817 23 H 0.108 0.892 24 H 0.094 0.906 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.105 0.895 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.154 0.846 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.503 -4.423 0.049 4.672 hybrid contribution 1.122 1.974 -0.194 2.279 sum -0.381 -2.449 -0.145 2.483 Atomic orbital electron populations 1.69721 1.06091 1.27136 1.49370 1.25480 0.95698 1.01255 0.93810 0.85776 0.78744 0.80334 0.78048 1.20175 1.20897 1.20361 1.21840 0.93052 0.92449 1.52330 0.93703 1.18109 0.88927 0.93580 0.86422 0.95303 1.60675 1.31537 1.35639 1.01659 1.22374 0.96774 1.03171 0.86598 1.23270 1.03741 0.95196 1.02531 1.23123 0.99855 0.95504 1.01890 1.20265 0.94232 0.93862 0.96363 1.21219 0.94014 0.95469 0.98372 1.21371 1.00209 1.01445 0.94368 1.21186 0.95988 1.00809 0.98649 1.21152 0.94995 1.01986 0.97720 1.21069 0.99708 1.01996 0.94209 0.92403 0.81683 0.89153 0.90648 0.88180 0.87147 0.89548 0.85887 0.86132 0.84600 0.84635 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.81 7.97 21.45 0.17 -45.64 16 2 C 0.04 2.04 5.05 84.65 0.43 2.47 16 3 Si 0.94 42.26 29.54 68.60 2.03 44.29 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.56 -29.60 8.74 25.60 0.22 -29.37 16 8 H 0.04 2.42 7.81 -2.91 -0.02 2.39 16 9 C 0.24 11.84 2.46 43.42 0.11 11.94 16 10 H 0.03 1.42 7.52 -2.39 -0.02 1.40 16 11 N -0.66 -31.00 5.67 -477.20 -2.71 -33.71 16 12 C 0.02 0.92 6.14 44.92 0.28 1.19 16 13 C -0.21 -7.42 10.23 30.59 0.31 -7.11 16 14 C -0.17 -5.44 10.46 30.60 0.32 -5.12 16 15 C -0.05 -2.22 4.79 -19.86 -0.10 -2.31 16 16 C -0.07 -3.39 7.66 22.27 0.17 -3.22 16 17 C -0.16 -6.32 10.05 22.27 0.22 -6.09 16 18 C -0.15 -5.35 10.05 22.27 0.22 -5.13 16 19 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 20 C -0.15 -6.50 9.70 22.27 0.22 -6.29 16 21 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 22 H 0.36 17.95 5.31 -89.69 -0.48 17.48 16 23 H 0.09 3.66 7.60 -2.39 -0.02 3.64 16 24 H 0.07 2.87 8.09 -2.39 -0.02 2.85 16 25 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 26 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.12 6.22 5.59 -2.91 -0.02 6.20 16 29 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 30 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 32 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -54.96 266.78 2.75 -52.21 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: 0.63 Total: 36.85 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 2.63 Total: -54.00 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.54 Total: -79.35 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -54.96 2.75 -52.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055014753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.842 kcal (2) G-P(sol) polarization free energy of solvation -54.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds