Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99646 * 2 1 4 4 C 1.52995 * 109.47094 * 124.99900 * 3 2 1 5 5 N 1.46505 * 109.46788 * 179.97438 * 4 3 2 6 6 C 1.38855 * 119.99648 * 179.97438 * 5 4 3 7 7 C 1.39568 * 119.84643 * 359.73541 * 6 5 4 8 8 C 1.36336 * 120.16398 * 179.71732 * 7 6 5 9 9 C 1.40887 * 119.83522 * 0.54986 * 8 7 6 10 10 C 1.41138 * 120.15888 * 179.70431 * 9 8 7 11 11 H 1.07998 * 120.00076 * 204.63105 * 10 9 8 12 12 C 1.39867 * 119.99657 * 24.62602 * 10 9 8 13 13 N 1.30899 * 120.00270 * 17.95962 * 12 10 9 14 14 Si 1.86808 * 119.99673 * 197.95959 * 12 10 9 15 15 H 1.48496 * 109.47088 * 60.00108 * 14 12 10 16 16 H 1.48501 * 109.46866 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46731 * 299.99953 * 14 12 10 18 18 C 1.40883 * 119.68869 * 359.72272 * 9 8 7 19 19 C 1.36343 * 119.84059 * 359.97438 * 18 9 8 20 20 H 1.07994 * 120.00585 * 0.02562 * 1 2 3 21 21 H 1.08007 * 119.99575 * 179.97438 * 1 2 3 22 22 H 1.08000 * 120.00164 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46983 * 4.99534 * 3 2 1 24 24 H 1.09006 * 109.46703 * 244.99689 * 3 2 1 25 25 H 1.08997 * 109.47083 * 60.00182 * 4 3 2 26 26 H 1.08998 * 109.47410 * 299.99707 * 4 3 2 27 27 H 0.96996 * 120.00184 * 0.02562 * 5 4 3 28 28 H 1.08003 * 119.91446 * 359.97233 * 7 6 5 29 29 H 1.08000 * 120.08688 * 180.27597 * 8 7 6 30 30 H 0.97001 * 120.00134 * 179.97438 * 13 12 10 31 31 H 1.08003 * 120.08598 * 179.97438 * 18 9 8 32 32 H 1.07998 * 119.92670 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 7 3.7678 2.6018 1.1812 6 6 4.7119 2.8584 2.1665 7 6 4.9562 1.9079 3.1588 8 6 5.8859 2.1507 4.1261 9 6 6.5925 3.3696 4.1289 10 6 7.5519 3.6307 5.1305 11 1 7.7997 4.6497 5.3885 12 6 8.1817 2.5696 5.7892 13 7 8.1627 1.3702 5.2651 14 14 9.0499 2.8641 7.4168 15 1 8.0745 3.3762 8.4125 16 1 9.6327 1.5884 7.9048 17 1 10.1331 3.8619 7.2264 18 6 6.3366 4.3268 3.1274 19 6 5.4085 4.0679 2.1627 20 1 -0.5401 0.9352 -0.0004 21 1 -0.5400 -0.9354 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3584 2.1317 0.0895 24 1 2.6213 1.4026 -0.9314 25 1 3.7399 0.5068 1.0920 26 1 2.4772 1.2358 2.1130 27 1 3.5929 3.2627 0.4931 28 1 4.4103 0.9760 3.1581 29 1 6.0771 1.4125 4.8908 30 1 8.5998 0.6344 5.7217 31 1 6.8742 5.2635 3.1236 32 1 5.2109 4.8009 1.3945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070592236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = 31.674691 kcal Electronic energy + Delta-G solvation = -13509.056179 eV Core-core repulsion = 11241.250977 eV Total energy + Delta-G solvation = -2267.805202 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.01933 -36.13434 -34.21440 -32.72101 -29.63096 -29.41539 -27.56757 -24.32199 -22.84653 -20.92777 -19.88136 -19.74066 -17.17399 -16.17905 -15.36769 -15.03162 -14.80465 -14.17500 -13.82611 -13.10247 -12.75464 -12.47044 -12.18697 -11.93245 -11.66493 -11.34838 -11.17413 -10.98387 -10.97705 -10.72093 -10.41318 -9.68008 -9.42342 -9.25392 -9.18447 -8.49492 -7.46223 -6.61376 -6.35830 -4.00509 2.18328 2.95689 3.13100 3.16062 3.19365 3.38955 4.07617 4.32312 4.79339 4.92510 5.12143 5.31944 5.35598 5.71049 5.79201 5.85247 6.17572 6.20986 6.30666 6.36558 6.52419 6.68286 6.96914 6.97293 7.23184 7.38852 7.58570 7.72187 7.87661 8.18065 8.32347 8.52587 8.74118 8.83271 9.08852 9.18417 10.40317 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.054776 B = 0.005455 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.052576 B = 5131.553284 C = 5518.170792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.105 4.105 4 C 0.143 3.857 5 N -0.764 5.764 6 C 0.091 3.909 7 C -0.164 4.164 8 C -0.125 4.125 9 C 0.074 3.926 10 C -0.469 4.469 11 H 0.072 0.928 12 C 0.075 3.925 13 N -0.808 5.808 14 Si 0.903 3.097 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.187 4.187 19 C -0.160 4.160 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.110 0.890 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.383 0.617 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.276 0.724 31 H 0.091 0.909 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 -2.085 -6.202 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.163 4.163 3 C -0.142 4.142 4 C 0.017 3.983 5 N -0.400 5.400 6 C -0.006 4.006 7 C -0.186 4.186 8 C -0.145 4.145 9 C 0.071 3.929 10 C -0.500 4.500 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.436 5.436 14 Si 0.728 3.272 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.207 4.207 19 C -0.182 4.182 20 H 0.113 0.887 21 H 0.114 0.886 22 H 0.128 0.872 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.215 0.785 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.855 -2.506 -6.077 11.028 hybrid contribution 0.406 0.204 0.444 0.635 sum -8.449 -2.302 -5.633 10.412 Atomic orbital electron populations 1.23830 0.95923 1.01713 1.02080 1.22882 0.95959 0.98421 0.99043 1.20942 0.98401 0.95622 0.99282 1.20919 0.92983 0.87824 0.96545 1.43872 1.45191 1.18598 1.32330 1.17367 0.95149 0.95497 0.92602 1.20103 1.02786 0.97814 0.97870 1.20936 0.95574 0.99116 0.98839 1.17490 0.92202 0.91517 0.91656 1.19339 1.19840 0.93575 1.17210 0.90979 1.25789 0.95369 0.94694 0.98142 1.69848 1.35956 1.01352 1.36404 0.86466 0.79818 0.78304 0.82603 1.19089 1.20591 1.19280 1.20542 1.02418 1.00692 0.97081 1.19813 1.01464 0.95763 1.01138 0.88678 0.88582 0.87193 0.91292 0.90707 0.93417 0.93485 0.78457 0.89412 0.86386 0.91287 0.89056 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 14.32 29.01 0.42 -1.49 16 2 C -0.14 -1.54 9.52 -36.02 -0.34 -1.89 16 3 C -0.10 -1.23 5.77 -27.88 -0.16 -1.39 16 4 C 0.14 2.19 4.87 -4.04 -0.02 2.17 16 5 N -0.76 -13.71 5.70 -58.50 -0.33 -14.04 16 6 C 0.09 2.04 6.67 -83.69 -0.56 1.48 16 7 C -0.16 -3.96 9.23 -39.77 -0.37 -4.32 16 8 C -0.12 -3.35 8.64 -39.26 -0.34 -3.69 16 9 C 0.07 2.05 5.57 -106.79 -0.60 1.45 16 10 C -0.47 -12.94 9.03 -37.87 -0.34 -13.28 16 11 H 0.07 1.92 7.91 -52.49 -0.41 1.50 16 12 C 0.08 1.97 5.13 -17.34 -0.09 1.88 16 13 N -0.81 -21.77 10.96 55.54 0.61 -21.16 16 14 Si 0.90 19.45 29.60 -169.99 -5.03 14.42 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 C -0.19 -4.74 9.74 -39.26 -0.38 -5.12 16 19 C -0.16 -3.68 9.82 -39.77 -0.39 -4.07 16 20 H 0.09 0.87 7.84 -52.49 -0.41 0.45 16 21 H 0.10 0.79 8.06 -52.48 -0.42 0.37 16 22 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 23 H 0.07 0.77 7.79 -51.93 -0.40 0.37 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 26 H 0.05 0.76 7.91 -51.93 -0.41 0.35 16 27 H 0.38 6.04 8.47 -40.82 -0.35 5.70 16 28 H 0.09 1.94 6.68 -52.48 -0.35 1.59 16 29 H 0.12 3.27 6.16 -52.49 -0.32 2.95 16 30 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 31 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 275.27 15.07 4.15 4.15 Total: -1.00 -28.58 275.27 -8.10 -36.68 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.32 Total: 8.22 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -3.17 Total: -28.26 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.28 Total: -35.21 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.58 -8.10 -36.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070592236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.355 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds