Wall clock time and date at job start Mon Mar 30 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99646 * 2 1 4 4 C 1.52995 * 109.47094 * 124.99900 * 3 2 1 5 5 N 1.46505 * 109.46788 * 179.97438 * 4 3 2 6 6 C 1.38855 * 119.99648 * 179.97438 * 5 4 3 7 7 C 1.39568 * 119.84643 * 359.73541 * 6 5 4 8 8 C 1.36336 * 120.16398 * 179.71732 * 7 6 5 9 9 C 1.40887 * 119.83522 * 0.54986 * 8 7 6 10 10 C 1.41138 * 120.15888 * 179.70431 * 9 8 7 11 11 H 1.07998 * 120.00076 * 204.63105 * 10 9 8 12 12 C 1.39867 * 119.99657 * 24.62602 * 10 9 8 13 13 N 1.30899 * 120.00270 * 17.95962 * 12 10 9 14 14 Si 1.86808 * 119.99673 * 197.95959 * 12 10 9 15 15 H 1.48496 * 109.47088 * 60.00108 * 14 12 10 16 16 H 1.48501 * 109.46866 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46731 * 299.99953 * 14 12 10 18 18 C 1.40883 * 119.68869 * 359.72272 * 9 8 7 19 19 C 1.36343 * 119.84059 * 359.97438 * 18 9 8 20 20 H 1.07994 * 120.00585 * 0.02562 * 1 2 3 21 21 H 1.08007 * 119.99575 * 179.97438 * 1 2 3 22 22 H 1.08000 * 120.00164 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46983 * 4.99534 * 3 2 1 24 24 H 1.09006 * 109.46703 * 244.99689 * 3 2 1 25 25 H 1.08997 * 109.47083 * 60.00182 * 4 3 2 26 26 H 1.08998 * 109.47410 * 299.99707 * 4 3 2 27 27 H 0.96996 * 120.00184 * 0.02562 * 5 4 3 28 28 H 1.08003 * 119.91446 * 359.97233 * 7 6 5 29 29 H 1.08000 * 120.08688 * 180.27597 * 8 7 6 30 30 H 0.97001 * 120.00134 * 179.97438 * 13 12 10 31 31 H 1.08003 * 120.08598 * 179.97438 * 18 9 8 32 32 H 1.07998 * 119.92670 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 7 3.7678 2.6018 1.1812 6 6 4.7119 2.8584 2.1665 7 6 4.9562 1.9079 3.1588 8 6 5.8859 2.1507 4.1261 9 6 6.5925 3.3696 4.1289 10 6 7.5519 3.6307 5.1305 11 1 7.7997 4.6497 5.3885 12 6 8.1817 2.5696 5.7892 13 7 8.1627 1.3702 5.2651 14 14 9.0499 2.8641 7.4168 15 1 8.0745 3.3762 8.4125 16 1 9.6327 1.5884 7.9048 17 1 10.1331 3.8619 7.2264 18 6 6.3366 4.3268 3.1274 19 6 5.4085 4.0679 2.1627 20 1 -0.5401 0.9352 -0.0004 21 1 -0.5400 -0.9354 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3584 2.1317 0.0895 24 1 2.6213 1.4026 -0.9314 25 1 3.7399 0.5068 1.0920 26 1 2.4772 1.2358 2.1130 27 1 3.5929 3.2627 0.4931 28 1 4.4103 0.9760 3.1581 29 1 6.0771 1.4125 4.8908 30 1 8.5998 0.6344 5.7217 31 1 6.8742 5.2635 3.1236 32 1 5.2109 4.8009 1.3945 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070592236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:56 Heat of formation + Delta-G solvation = 16.033392 kcal Electronic energy + Delta-G solvation = -13509.734437 eV Core-core repulsion = 11241.250977 eV Total energy + Delta-G solvation = -2268.483460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80571 -37.47721 -35.72008 -34.35257 -31.35951 -31.16405 -29.08924 -26.09812 -24.26410 -22.73017 -21.61598 -20.66173 -19.14994 -17.81074 -16.83327 -16.40914 -16.35140 -15.63290 -15.26431 -14.55349 -14.51488 -13.93392 -13.89516 -13.61576 -13.22742 -12.85769 -12.73106 -12.66685 -12.30021 -12.07830 -11.91059 -11.57154 -11.17641 -11.04992 -10.30871 -10.21905 -9.41252 -8.54792 -8.17276 -6.00963 1.11152 1.18491 1.39595 1.40545 1.51658 1.60463 2.27893 2.84417 2.93151 3.84677 4.02399 4.19350 4.25818 4.43887 4.47932 4.51677 4.68304 4.97969 5.01705 5.08463 5.13085 5.17518 5.28557 5.45692 5.68111 5.75543 5.80090 5.88770 5.96450 6.18696 6.38757 6.66534 6.86436 7.08310 7.15344 7.32874 8.48603 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.054776 B = 0.005455 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.052576 B = 5131.553284 C = 5518.170792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.164 4.164 3 C -0.092 4.092 4 C 0.140 3.860 5 N -0.753 5.753 6 C 0.107 3.893 7 C -0.176 4.176 8 C -0.145 4.145 9 C 0.035 3.965 10 C -0.508 4.508 11 H 0.069 0.931 12 C 0.032 3.968 13 N -0.842 5.842 14 Si 0.977 3.023 15 H -0.263 1.263 16 H -0.270 1.270 17 H -0.261 1.261 18 C -0.196 4.196 19 C -0.165 4.165 20 H 0.101 0.899 21 H 0.110 0.890 22 H 0.113 0.887 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.398 0.602 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.282 0.718 31 H 0.098 0.902 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 -1.959 -7.072 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.183 4.183 3 C -0.130 4.130 4 C 0.015 3.985 5 N -0.389 5.389 6 C 0.008 3.992 7 C -0.198 4.198 8 C -0.165 4.165 9 C 0.032 3.968 10 C -0.539 4.539 11 H 0.087 0.913 12 C -0.180 4.180 13 N -0.470 5.470 14 Si 0.799 3.201 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.186 1.186 18 C -0.216 4.216 19 C -0.187 4.187 20 H 0.120 0.880 21 H 0.128 0.872 22 H 0.131 0.869 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.232 0.768 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.037 -2.377 -6.992 12.462 hybrid contribution 0.604 0.151 0.553 0.833 sum -9.433 -2.226 -6.439 11.636 Atomic orbital electron populations 1.24044 0.95630 1.02782 0.99940 1.22882 0.96425 0.98042 1.00941 1.20820 0.97734 0.96669 0.97745 1.21057 0.93217 0.86165 0.98081 1.43932 1.43832 1.19911 1.31224 1.17499 0.94750 0.94581 0.92399 1.20255 1.02606 0.99009 0.97939 1.20868 0.97038 0.98966 0.99656 1.17827 0.93297 0.92642 0.93000 1.19593 1.21298 0.94022 1.19017 0.91278 1.26626 0.95843 0.94116 1.01382 1.69916 1.36978 1.02241 1.37903 0.85335 0.78605 0.78580 0.77600 1.18747 1.19439 1.18570 1.20773 1.03041 1.00600 0.97189 1.20130 1.00659 0.96676 1.01257 0.88033 0.87160 0.86890 0.90420 0.89921 0.94217 0.94220 0.76758 0.87943 0.88318 0.90731 0.88339 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 14.32 67.78 0.97 -2.09 16 2 C -0.16 -3.11 9.52 25.65 0.24 -2.87 16 3 C -0.09 -1.91 5.77 29.85 0.17 -1.74 16 4 C 0.14 4.01 4.87 86.38 0.42 4.43 16 5 N -0.75 -25.20 5.70 -338.99 -1.93 -27.13 16 6 C 0.11 4.67 6.67 38.67 0.26 4.93 16 7 C -0.18 -8.53 9.23 22.15 0.20 -8.32 16 8 C -0.15 -8.04 8.64 22.47 0.19 -7.85 16 9 C 0.04 2.00 5.57 -21.27 -0.12 1.88 16 10 C -0.51 -29.01 9.03 23.38 0.21 -28.79 16 11 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 12 C 0.03 1.72 5.13 85.23 0.44 2.16 16 13 N -0.84 -46.71 10.96 21.82 0.24 -46.47 16 14 Si 0.98 40.50 29.60 68.60 2.03 42.53 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 16 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 18 C -0.20 -9.97 9.74 22.48 0.22 -9.75 16 19 C -0.17 -7.36 9.82 22.15 0.22 -7.14 16 20 H 0.10 1.53 7.84 -2.91 -0.02 1.50 16 21 H 0.11 1.49 8.06 -2.91 -0.02 1.46 16 22 H 0.11 2.05 8.06 -2.91 -0.02 2.02 16 23 H 0.08 1.49 7.79 -2.39 -0.02 1.47 16 24 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.04 1.22 7.94 -2.39 -0.02 1.20 16 26 H 0.04 1.22 7.91 -2.39 -0.02 1.20 16 27 H 0.40 11.21 8.47 -92.71 -0.79 10.42 16 28 H 0.10 4.54 6.68 -2.91 -0.02 4.52 16 29 H 0.10 5.74 6.16 -2.91 -0.02 5.72 16 30 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 31 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -62.35 275.27 4.08 -58.27 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.31 Total: 27.96 kcal Atomic # 6 Polarization: -58.58 SS G_CDS: 3.43 Total: -55.15 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -1.69 Total: -73.60 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -62.35 4.08 -58.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070592236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.301 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds