Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47030 * 2 1 4 4 C 1.38298 * 120.08081 * 269.97965 * 3 2 1 5 5 C 1.37833 * 120.22968 * 180.02562 * 4 3 2 6 6 C 1.39673 * 120.28100 * 359.97438 * 5 4 3 7 7 C 1.38603 * 119.02608 * 359.77556 * 6 5 4 8 8 C 1.38167 * 120.47467 * 0.48586 * 7 6 5 9 9 C 1.51220 * 108.53761 * 180.30831 * 7 6 5 10 10 H 1.09000 * 110.41873 * 119.09695 * 9 7 6 11 11 C 1.50700 * 110.42458 * 241.44968 * 9 7 6 12 12 H 1.07997 * 119.99780 * 0.02562 * 11 9 7 13 13 C 1.37872 * 119.99839 * 180.02562 * 11 9 7 14 14 N 1.31520 * 120.00297 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00006 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47322 * 89.99779 * 15 13 11 17 17 H 1.48499 * 109.46962 * 210.00223 * 15 13 11 18 18 H 1.48506 * 109.46835 * 329.99925 * 15 13 11 19 19 C 1.53748 * 104.53799 * 0.21855 * 9 7 6 20 20 N 1.39575 * 129.32119 * 179.97438 * 6 5 4 21 21 H 1.09004 * 109.47041 * 299.99903 * 1 2 3 22 22 H 1.09001 * 109.47291 * 60.00192 * 1 2 3 23 23 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47041 * 240.00097 * 2 1 3 25 25 H 1.09001 * 109.47291 * 119.99807 * 2 1 3 26 26 H 1.08002 * 119.88743 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.85694 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.92673 * 179.76786 * 8 7 6 29 29 H 0.96995 * 120.00175 * 180.02562 * 14 13 11 30 30 H 1.09000 * 110.30272 * 118.92191 * 19 9 7 31 31 H 1.09004 * 110.30109 * 241.07120 * 19 9 7 32 32 H 0.96998 * 124.95445 * 0.04852 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2637 2.0743 -1.1967 5 6 2.7237 3.3736 -1.2003 6 6 2.9591 4.0407 0.0040 7 6 2.7189 3.3785 1.1977 8 6 2.2630 2.0742 1.1961 9 6 3.0425 4.3147 2.3404 10 1 2.1557 4.4934 2.9484 11 6 4.1532 3.7475 3.1864 12 1 4.5946 2.7956 2.9307 13 6 4.6059 4.4440 4.2869 14 7 4.0680 5.6030 4.5986 15 14 5.9831 3.7414 5.3352 16 1 7.2917 4.2086 4.8113 17 1 5.8197 4.1989 6.7385 18 1 5.9326 2.2579 5.2892 19 6 3.4985 5.6143 1.6572 20 7 3.4195 5.3405 0.2198 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0835 1.5647 -2.1317 27 1 2.9020 3.8783 -2.1384 28 1 2.0823 1.5654 2.1315 29 1 4.3868 6.0931 5.3725 30 1 2.8373 6.4369 1.9295 31 1 4.5267 5.8468 1.9347 32 1 3.6439 5.9739 -0.4798 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071487011.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = 14.303767 kcal Electronic energy + Delta-G solvation = -14207.777014 eV Core-core repulsion = 11939.218552 eV Total energy + Delta-G solvation = -2268.558462 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42683 -36.22753 -33.15969 -32.24402 -30.72350 -27.87936 -27.63765 -24.48754 -23.09286 -21.72426 -20.46643 -19.25777 -16.73893 -16.18844 -15.00930 -14.80616 -14.29752 -13.82353 -13.73514 -12.95259 -12.73969 -12.65132 -12.14787 -11.88033 -11.54478 -11.28779 -11.00108 -10.97159 -10.76273 -10.60312 -10.40432 -10.20365 -9.41880 -9.35902 -8.95408 -8.51170 -7.86940 -6.37857 -6.04830 -4.13004 2.29104 2.38292 3.28289 3.35041 3.39616 4.36687 4.40365 4.68048 5.22661 5.33523 5.36025 5.67277 5.73757 5.81170 5.95350 6.12185 6.16965 6.25335 6.37838 6.48637 6.54575 6.57319 6.71218 6.84610 7.06855 7.30964 7.45222 7.46375 7.64037 7.76360 7.87383 8.12767 8.32551 8.74246 8.91525 9.51733 10.99659 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.008975 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.368453 B = 3119.190207 C = 3695.518991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.198 4.198 6 C 0.188 3.812 7 C -0.124 4.124 8 C -0.062 4.062 9 C 0.078 3.922 10 H 0.048 0.952 11 C -0.503 4.503 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.137 3.863 20 N -0.752 5.752 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.262 0.738 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 -5.017 -8.250 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.155 4.155 4 C -0.109 4.109 5 C -0.221 4.221 6 C 0.083 3.917 7 C -0.128 4.128 8 C -0.081 4.081 9 C 0.059 3.941 10 H 0.065 0.935 11 C -0.542 4.542 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.013 3.987 20 N -0.382 5.382 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.738 -4.741 -7.958 9.989 hybrid contribution 0.955 0.165 0.291 1.012 sum -2.783 -4.576 -7.667 9.352 Atomic orbital electron populations 1.21761 0.95844 1.00578 1.02021 1.20303 0.95278 0.93528 1.01628 1.19377 1.06810 0.96232 0.93057 1.20320 1.00082 0.93886 0.96644 1.20117 1.10931 0.96061 0.95020 1.18497 0.92931 0.86193 0.94047 1.20567 1.01794 0.94985 0.95448 1.20171 0.98011 0.93102 0.96808 1.18299 0.97135 0.88275 0.90386 0.93464 1.21053 1.17807 1.05718 1.09573 0.92165 1.25006 0.96860 0.94996 0.97218 1.69947 1.41921 1.13684 1.27582 0.86541 0.82203 0.79544 0.79474 1.20688 1.21167 1.19742 1.22084 1.00905 0.99065 0.76623 1.45123 1.73256 1.11460 1.08329 0.92623 0.92988 0.93363 0.92193 0.91803 0.87466 0.87888 0.86930 0.92794 0.93975 0.91650 0.77000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 37.16 0.37 -1.45 16 2 C -0.07 -0.99 6.07 -27.88 -0.17 -1.16 16 3 C -0.15 -2.70 5.14 -104.60 -0.54 -3.23 16 4 C -0.09 -1.55 9.68 -39.71 -0.38 -1.93 16 5 C -0.20 -3.62 10.07 -39.19 -0.39 -4.02 16 6 C 0.19 3.97 7.03 -83.66 -0.59 3.38 16 7 C -0.12 -2.83 5.50 -104.26 -0.57 -3.41 16 8 C -0.06 -1.28 9.70 -39.61 -0.38 -1.66 16 9 C 0.08 1.98 2.90 -92.28 -0.27 1.71 16 10 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 11 C -0.50 -13.79 8.38 -34.44 -0.29 -14.08 16 12 H 0.06 1.68 7.76 -52.49 -0.41 1.27 16 13 C 0.06 1.66 5.16 -17.82 -0.09 1.57 16 14 N -0.89 -24.99 12.64 55.43 0.70 -24.29 16 15 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 19 C 0.14 3.22 6.85 -3.63 -0.02 3.19 16 20 N -0.75 -15.28 6.53 -58.11 -0.38 -15.66 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 26 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 28 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.66 7.45 -51.93 -0.39 1.28 16 32 H 0.39 6.68 8.96 -40.82 -0.37 6.31 16 LS Contribution 269.95 15.07 4.07 4.07 Total: -1.00 -28.34 269.95 -8.49 -36.83 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.52 Total: 4.03 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.34 Total: -21.09 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.32 Total: -39.95 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.34 -8.49 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071487011.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.129 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds