Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47030 * 2 1 4 4 C 1.38298 * 120.08081 * 269.97965 * 3 2 1 5 5 C 1.37833 * 120.22968 * 180.02562 * 4 3 2 6 6 C 1.39673 * 120.28100 * 359.97438 * 5 4 3 7 7 C 1.38603 * 119.02608 * 359.77556 * 6 5 4 8 8 C 1.38167 * 120.47467 * 0.48586 * 7 6 5 9 9 C 1.51220 * 108.53761 * 180.30831 * 7 6 5 10 10 H 1.09000 * 110.41873 * 119.09695 * 9 7 6 11 11 C 1.50700 * 110.42458 * 241.44968 * 9 7 6 12 12 H 1.07997 * 119.99780 * 0.02562 * 11 9 7 13 13 C 1.37872 * 119.99839 * 180.02562 * 11 9 7 14 14 N 1.31520 * 120.00297 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00006 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47322 * 89.99779 * 15 13 11 17 17 H 1.48499 * 109.46962 * 210.00223 * 15 13 11 18 18 H 1.48506 * 109.46835 * 329.99925 * 15 13 11 19 19 C 1.53748 * 104.53799 * 0.21855 * 9 7 6 20 20 N 1.39575 * 129.32119 * 179.97438 * 6 5 4 21 21 H 1.09004 * 109.47041 * 299.99903 * 1 2 3 22 22 H 1.09001 * 109.47291 * 60.00192 * 1 2 3 23 23 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47041 * 240.00097 * 2 1 3 25 25 H 1.09001 * 109.47291 * 119.99807 * 2 1 3 26 26 H 1.08002 * 119.88743 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.85694 * 180.02562 * 5 4 3 28 28 H 1.08002 * 119.92673 * 179.76786 * 8 7 6 29 29 H 0.96995 * 120.00175 * 180.02562 * 14 13 11 30 30 H 1.09000 * 110.30272 * 118.92191 * 19 9 7 31 31 H 1.09004 * 110.30109 * 241.07120 * 19 9 7 32 32 H 0.96998 * 124.95445 * 0.04852 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2637 2.0743 -1.1967 5 6 2.7237 3.3736 -1.2003 6 6 2.9591 4.0407 0.0040 7 6 2.7189 3.3785 1.1977 8 6 2.2630 2.0742 1.1961 9 6 3.0425 4.3147 2.3404 10 1 2.1557 4.4934 2.9484 11 6 4.1532 3.7475 3.1864 12 1 4.5946 2.7956 2.9307 13 6 4.6059 4.4440 4.2869 14 7 4.0680 5.6030 4.5986 15 14 5.9831 3.7414 5.3352 16 1 7.2917 4.2086 4.8113 17 1 5.8197 4.1989 6.7385 18 1 5.9326 2.2579 5.2892 19 6 3.4985 5.6143 1.6572 20 7 3.4195 5.3405 0.2198 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0835 1.5647 -2.1317 27 1 2.9020 3.8783 -2.1384 28 1 2.0823 1.5654 2.1315 29 1 4.3868 6.0931 5.3725 30 1 2.8373 6.4369 1.9295 31 1 4.5267 5.8468 1.9347 32 1 3.6439 5.9739 -0.4798 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071487011.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = -1.750542 kcal Electronic energy + Delta-G solvation = -14208.473181 eV Core-core repulsion = 11939.218552 eV Total energy + Delta-G solvation = -2269.254629 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.03044 -37.76008 -35.05244 -33.63382 -32.45023 -29.64826 -29.06052 -26.49196 -24.42198 -23.23500 -22.19586 -20.80213 -18.53419 -18.10345 -16.70378 -16.40455 -15.84825 -15.62183 -15.05550 -14.32725 -14.24791 -14.08464 -13.89645 -13.41752 -13.18646 -12.96297 -12.74879 -12.59751 -12.49791 -12.22193 -11.75883 -11.61498 -11.38614 -11.10678 -10.67690 -10.51591 -9.44931 -8.24731 -7.88760 -6.30144 0.75343 0.87641 1.39554 1.40319 1.51396 2.40076 2.78117 3.09258 3.15784 4.03200 4.14849 4.33977 4.43800 4.51660 4.67666 4.72617 4.74668 4.82075 4.86846 5.03338 5.13738 5.19711 5.32557 5.36118 5.49984 5.53026 5.69412 5.75446 5.93522 6.02904 6.06468 6.26490 6.51964 6.76657 7.27250 7.37976 8.89662 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.008975 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.368453 B = 3119.190207 C = 3695.518991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.189 4.189 6 C 0.166 3.834 7 C -0.163 4.163 8 C -0.079 4.079 9 C 0.072 3.928 10 H 0.011 0.989 11 C -0.520 4.520 12 H 0.048 0.952 13 C 0.016 3.984 14 N -0.918 5.918 15 Si 0.957 3.043 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.270 1.270 19 C 0.153 3.847 20 N -0.745 5.745 21 H 0.039 0.961 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.265 0.735 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -6.646 -10.318 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.212 4.212 6 C 0.063 3.937 7 C -0.168 4.168 8 C -0.098 4.098 9 C 0.053 3.947 10 H 0.029 0.971 11 C -0.558 4.558 12 H 0.066 0.934 13 C -0.183 4.183 14 N -0.557 5.557 15 Si 0.783 3.217 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.194 1.194 19 C 0.028 3.972 20 N -0.378 5.378 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.168 0.832 27 H 0.153 0.847 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.666 -6.375 -10.055 12.457 hybrid contribution 0.860 0.592 0.874 1.362 sum -2.805 -5.784 -9.180 11.207 Atomic orbital electron populations 1.21730 0.94535 1.02071 1.01554 1.20394 0.96314 0.91165 1.02849 1.19801 1.04993 0.97827 0.92124 1.20832 0.97988 0.93372 0.97969 1.20525 1.09190 0.96468 0.94976 1.18722 0.94108 0.86258 0.94632 1.20540 1.04926 0.96149 0.95177 1.20311 0.98831 0.92675 0.98009 1.18154 0.95202 0.90155 0.91155 0.97130 1.21238 1.18592 1.05443 1.10576 0.93356 1.25749 0.99029 0.95270 0.98259 1.70049 1.43037 1.14614 1.28024 0.85561 0.79363 0.78853 0.77970 1.20038 1.20393 1.19440 1.21580 0.98973 0.97900 0.78758 1.44833 1.73860 1.11994 1.07152 0.94227 0.92357 0.90943 0.89609 0.91998 0.83237 0.84733 0.87945 0.92587 0.94594 0.94088 0.74970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.89 71.98 0.71 -2.41 16 2 C -0.07 -1.75 6.07 29.85 0.18 -1.57 16 3 C -0.15 -4.81 5.14 -19.85 -0.10 -4.92 16 4 C -0.08 -2.51 9.68 22.19 0.21 -2.30 16 5 C -0.19 -6.32 10.07 22.52 0.23 -6.10 16 6 C 0.17 6.94 7.03 38.34 0.27 7.20 16 7 C -0.16 -7.69 5.50 -19.63 -0.11 -7.80 16 8 C -0.08 -3.31 9.70 22.25 0.22 -3.09 16 9 C 0.07 3.87 2.90 -11.87 -0.03 3.84 16 10 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 11 C -0.52 -29.75 8.38 25.60 0.21 -29.53 16 12 H 0.05 2.80 7.76 -2.91 -0.02 2.77 16 13 C 0.02 0.91 5.16 84.65 0.44 1.34 16 14 N -0.92 -53.09 12.64 21.45 0.27 -52.82 16 15 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 C 0.15 7.51 6.85 86.62 0.59 8.10 16 20 N -0.75 -30.42 6.53 -337.76 -2.20 -32.62 16 21 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 25 H 0.06 1.58 8.09 -2.39 -0.02 1.56 16 26 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 27 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 2.18 7.45 -2.38 -0.02 2.16 16 32 H 0.41 13.61 8.96 -92.71 -0.83 12.78 16 Total: -1.00 -62.90 269.95 3.19 -59.72 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.27 Total: 16.84 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 2.82 Total: -37.25 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.93 Total: -85.45 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -62.90 3.19 -59.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071487011.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.968 kcal (2) G-P(sol) polarization free energy of solvation -62.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds