Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99945 * 2 1 4 4 H 1.48492 * 109.46986 * 275.41523 * 3 2 1 5 5 H 1.48501 * 109.47136 * 35.41467 * 3 2 1 6 6 H 1.48501 * 109.46958 * 155.41510 * 3 2 1 7 7 C 1.39943 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00342 * 341.70596 * 7 2 1 9 9 C 1.41401 * 119.99619 * 161.71400 * 7 2 1 10 10 C 1.40738 * 120.24108 * 150.48088 * 9 7 2 11 11 C 1.37596 * 119.73976 * 180.27286 * 10 9 7 12 12 C 1.38657 * 120.25440 * 359.74942 * 11 10 9 13 13 C 1.38619 * 120.49699 * 359.97019 * 12 11 10 14 14 C 1.50694 * 119.87529 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.87978 * 200.44458 * 14 13 12 16 16 C 1.54320 * 109.88987 * 79.24901 * 14 13 12 17 17 C 1.55146 * 103.01912 * 218.31124 * 16 14 13 18 18 C 1.54909 * 101.65172 * 35.65266 * 17 16 14 19 19 N 1.47443 * 109.88906 * 321.47827 * 14 13 12 20 20 C 1.37641 * 120.24924 * 0.02756 * 13 12 11 21 21 H 0.97001 * 119.99889 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.13432 * 0.02562 * 10 9 7 23 23 H 1.08009 * 119.87589 * 179.71777 * 11 10 9 24 24 H 1.07996 * 119.75104 * 180.02562 * 12 11 10 25 25 H 1.09007 * 110.70296 * 336.69079 * 16 14 13 26 26 H 1.08993 * 110.71042 * 99.92492 * 16 14 13 27 27 H 1.08992 * 110.99015 * 277.55773 * 17 16 14 28 28 H 1.08999 * 111.02040 * 153.75809 * 17 16 14 29 29 H 1.09003 * 110.36637 * 204.09984 * 18 17 16 30 30 H 1.08998 * 110.46796 * 81.80723 * 18 17 16 31 31 H 1.00902 * 111.00535 * 240.68374 * 19 14 13 32 32 H 1.07993 * 120.12851 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5016 2.6170 0.8113 6 1 3.5923 1.4099 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5089 -2.1238 0.2926 9 6 3.3684 -1.2427 -0.3848 10 6 4.2363 -2.2091 0.1569 11 6 5.5595 -2.2260 -0.2199 12 6 6.0376 -1.2990 -1.1336 13 6 5.1904 -0.3464 -1.6780 14 6 5.7247 0.6540 -2.6703 15 1 5.0628 1.5186 -2.7179 16 6 5.8414 0.0006 -4.0635 17 6 7.1576 0.6023 -4.6225 18 6 8.0255 0.6994 -3.3430 19 7 7.0791 1.0803 -2.2729 20 6 3.8631 -0.3107 -1.3156 21 1 -0.4850 0.8401 0.0004 22 1 3.8662 -2.9320 0.8687 23 1 6.2286 -2.9638 0.1979 24 1 7.0776 -1.3200 -1.4240 25 1 5.9198 -1.0831 -3.9755 26 1 4.9942 0.2771 -4.6910 27 1 6.9843 1.5886 -5.0526 28 1 7.6133 -0.0656 -5.3536 29 1 8.7922 1.4650 -3.4619 30 1 8.4836 -0.2640 -3.1192 31 1 7.1094 2.0740 -2.1003 32 1 3.2049 0.4325 -1.7406 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072201558.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = 11.533379 kcal Electronic energy + Delta-G solvation = -14352.213396 eV Core-core repulsion = 12083.534801 eV Total energy + Delta-G solvation = -2268.678595 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.91290 -36.97671 -33.48246 -31.00730 -30.18467 -29.83330 -27.12105 -25.00225 -21.84001 -21.20706 -20.96933 -19.02236 -17.22468 -16.39072 -15.76580 -14.93663 -14.49577 -13.88409 -13.52465 -13.31586 -12.80586 -12.58067 -12.16666 -11.83152 -11.69941 -11.43486 -11.03688 -10.98153 -10.72675 -10.59312 -10.42715 -10.17389 -9.63432 -9.54114 -9.04114 -8.21474 -7.50717 -7.42041 -6.85211 -4.38230 2.66453 2.79780 3.15090 3.25907 3.39588 4.06096 4.39540 4.67751 4.85646 4.98098 5.17958 5.48425 5.56029 5.66773 5.67884 5.95243 5.97025 6.09847 6.15943 6.22290 6.44512 6.49247 6.69217 6.86720 7.03662 7.10490 7.32147 7.51618 7.61353 7.80154 7.91995 8.05465 8.24503 8.45772 8.77751 8.91693 10.18141 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.010079 C = 0.008689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.593823 B = 2777.414726 C = 3221.574547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.085 3.915 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.243 1.243 7 C -0.454 4.454 8 H 0.088 0.912 9 C 0.091 3.909 10 C -0.208 4.208 11 C -0.094 4.094 12 C -0.203 4.203 13 C -0.036 4.036 14 C 0.118 3.882 15 H 0.058 0.942 16 C -0.128 4.128 17 C -0.155 4.155 18 C 0.050 3.950 19 N -0.674 5.674 20 C -0.232 4.232 21 H 0.282 0.718 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.334 0.666 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.649 3.511 -6.383 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.132 4.132 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.484 4.484 8 H 0.106 0.894 9 C 0.089 3.911 10 C -0.228 4.228 11 C -0.113 4.113 12 C -0.222 4.222 13 C -0.037 4.037 14 C 0.009 3.991 15 H 0.076 0.924 16 C -0.167 4.167 17 C -0.194 4.194 18 C -0.079 4.079 19 N -0.301 5.301 20 C -0.252 4.252 21 H 0.093 0.907 22 H 0.115 0.885 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.507 3.049 -5.930 12.444 hybrid contribution -0.105 1.435 -0.681 1.591 sum 10.402 4.484 -6.611 13.115 Atomic orbital electron populations 1.69708 1.08029 1.29922 1.36514 1.26097 0.94636 1.01541 0.90970 0.86349 0.81491 0.80019 0.78524 1.20032 1.22096 1.16615 1.19434 0.93304 0.95996 1.39622 0.89384 1.17668 0.92964 0.90927 0.89569 1.21027 0.93231 1.03897 1.04608 1.20682 0.95266 0.97734 0.97597 1.20156 0.98080 0.99600 1.04395 1.19173 0.93156 0.95080 0.96289 1.21043 0.89160 0.96196 0.92723 0.92391 1.22816 0.96940 1.01576 0.95369 1.23165 0.96988 1.00803 0.98481 1.22857 0.94843 1.01368 0.88875 1.61540 1.05418 1.20441 1.42730 1.20858 0.94847 1.05133 1.04341 0.90727 0.88498 0.89067 0.88531 0.90307 0.91257 0.91882 0.91038 0.92068 0.90671 0.85054 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.47 13.93 55.55 0.77 -21.70 16 2 C 0.08 2.31 5.40 -17.34 -0.09 2.21 16 3 Si 0.91 21.57 24.52 -169.99 -4.17 17.40 16 4 H -0.27 -6.27 6.71 56.52 0.38 -5.89 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.97 6.86 56.52 0.39 -5.58 16 7 C -0.45 -12.73 9.57 -37.74 -0.36 -13.09 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.09 2.40 5.11 -106.82 -0.55 1.86 16 10 C -0.21 -5.05 9.80 -38.87 -0.38 -5.43 16 11 C -0.09 -2.08 10.02 -39.66 -0.40 -2.47 16 12 C -0.20 -4.38 9.29 -39.29 -0.36 -4.74 16 13 C -0.04 -0.79 4.84 -104.70 -0.51 -1.30 16 14 C 0.12 2.11 3.55 -67.88 -0.24 1.87 16 15 H 0.06 1.05 8.02 -51.93 -0.42 0.63 16 16 C -0.13 -1.97 6.46 -24.90 -0.16 -2.13 16 17 C -0.16 -1.88 7.08 -24.59 -0.17 -2.05 16 18 C 0.05 0.63 7.57 -2.30 -0.02 0.61 16 19 N -0.67 -10.53 6.22 -105.03 -0.65 -11.18 16 20 C -0.23 -5.73 6.80 -38.87 -0.26 -6.00 16 21 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 22 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 23 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 24 H 0.10 1.93 7.67 -52.49 -0.40 1.53 16 25 H 0.08 1.29 7.80 -51.92 -0.41 0.88 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.33 4.62 8.91 -39.29 -0.35 4.27 16 32 H 0.10 2.38 4.71 -52.49 -0.25 2.13 16 LS Contribution 261.11 15.07 3.93 3.93 Total: -1.00 -28.57 261.11 -7.99 -36.57 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.37 Total: 5.62 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -3.51 Total: -30.65 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.12 Total: -32.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.17 Total: 17.40 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.57 -7.99 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072201558.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.102 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds